| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2228866 = | 54 (0.690) | 39 (0.510) | 21/244 | 1.7 | 59.2% | intergenic (‑118/‑88) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | CP006881 | 3304616 = | 1 (0.010) | intergenic (+4/+45) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT | |||||
CATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC > CP006881/3304558‑3304750 | tgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCaaa < 6:307091‑M2/81‑1 (MQ=255) tcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacg < 1:193324‑M2/83‑1 (MQ=255) actgttaatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 6:369550‑M2/85‑1 (MQ=255) actgataatttaagacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 1:303916‑M2/85‑1 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTtat < 5:185472‑M2/40‑1 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTtat > 6:185472‑M2/55‑94 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa > 1:348694‑M2/55‑139 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 8:156356‑M2/85‑1 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 4:190232‑M2/85‑1 (MQ=255) tttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCgat < 8:186735‑M2/72‑1 (MQ=255) tttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCgat > 7:186735‑M2/47‑118 (MQ=255) aGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATtctgt > 1:16699/1‑139 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTta > 8:19324‑M2/37‑75 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTta < 7:19324‑M2/39‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt > 8:84381‑M2/37‑139 (MQ=255) gagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCaaa > 5:351290‑M2/29‑109 (MQ=255) gagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCaaa < 6:351290‑M2/81‑1 (MQ=255) gagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGt > 1:278819‑M2/29‑139 (MQ=255) gagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGt > 3:86866‑M2/29‑139 (MQ=255) agtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGtt > 4:91372‑M2/28‑139 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa < 5:46003‑M2/89‑1 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa > 6:46003‑M2/27‑115 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCTTGTTCAAAGGttt > 4:105720‑M2/27‑139 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt < 3:85705‑M2/113‑1 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGtt > 8:210305‑M2/27‑138 (MQ=255) tgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTGCTGAGTTaa < 7:202990‑M2/122‑1 (MQ=255) tattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAc > 8:271749‑M2/16‑138 (MQ=255) acgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATaa < 7:8673‑M2/128‑1 (MQ=255) acgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATaa < 5:310093‑M2/128‑1 (MQ=255) acgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATaa < 4:328990‑M2/128‑1 (MQ=255) cagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTc > 6:356792‑M2/8‑139 (MQ=255) agtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCg > 7:119026‑M2/7‑139 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGc < 7:361321‑M2/99‑1 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGc > 8:361321‑M2/6‑104 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCg > 6:217148‑M2/6‑138 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt > 3:349102‑M2/6‑139 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt > 2:172434‑M2/6‑139 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt > 6:56509‑M2/6‑139 (MQ=255) taaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc < 6:352773‑M2/135‑1 (MQ=255) taaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTGTCTGAGTTAACCATAATTTCGt > 8:156380‑M2/5‑138 (MQ=255) | CATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC > CP006881/3304558‑3304750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |