New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BS168_reference_genome 3484072 =NA (NA)2105 (0.140) 13/272 NT 5.2% coding (1395/1395 nt) araE arabinose‑related compounds permease
?pSIJ663_pHT315_araE_xy = 11232 39518 (1.280)intergenic (+6501/–) ampR/– –/–

Only 100 of 48297 total aligned reads displayed.

GGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAACG  >  pSIJ663_pHT315_araE_xy/11075‑11381
                                                                                                                                                             |                                                                                                                                                     
        tataCATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTT                                                                                                                                                       >  2:4974580‑M2/1‑150 (MQ=255)
         ataCATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTtg                                                                                                                                                      <  1:4954842/150‑1 (MQ=255)
             aTTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTc                                                                                                                                                  >  2:2664831/1‑150 (MQ=255)
              ttttGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCa                                                                                                                                                 <  1:5414415/150‑1 (MQ=255)
                  ggATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAAt                                                                                                                                             <  2:1201426/150‑1 (MQ=255)
                  ggATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAAt                                                                                                                                             >  1:2020639/1‑150 (MQ=255)
                     tCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTaa                                                                                                                                          <  2:5367022/150‑1 (MQ=255)
                      cTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCATCTGAAATAGCTGCGCTTATTTGTGTCATAATTAag                                                                                                                                         <  2:697640/150‑1 (MQ=255)
                      cTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAag                                                                                                                                         >  2:1975212/1‑150 (MQ=255)
                        ttGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAagcc                                                                                                                                       <  2:3851918/150‑1 (MQ=255)
                           cGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTTCGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAagccagc                                                                                                                                    >  1:5738475/1‑150 (MQ=255)
                            ggTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAagccagcc                                                                                                                                   >  2:2859686/1‑150 (MQ=255)
                            ggTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAagccagcc                                                                                                                                   >  2:3556213/1‑150 (MQ=255)
                                 ttAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGac                                                                                                                              <  2:3361644/150‑1 (MQ=255)
                                 ttAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGac                                                                                                                              >  1:178162/1‑150 (MQ=255)
                                  tAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGaca                                                                                                                             >  1:3722540/1‑150 (MQ=255)
                                    aCATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACAcc                                                                                                                           <  2:3263278/150‑1 (MQ=255)
                                     cATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATGGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAACGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACAccc                                                                                                                          <  1:3957300/150‑1 (MQ=255)
                                     cATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACAccc                                                                                                                          <  2:3653649/150‑1 (MQ=255)
                                         cTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGGCATAATTAAGCCAGCCCCGACACCCGCCa                                                                                                                      >  2:5669050/1‑150 (MQ=255)
                                          tttGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCaa                                                                                                                     <  2:546578/150‑1 (MQ=255)
                                          tttGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCaa                                                                                                                     <  2:3756100/150‑1 (MQ=255)
                                                    gTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGa                                                                                                           >  1:4187585/1‑150 (MQ=255)
                                                      ttGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAcg                                                                                                         >  2:4880356/1‑150 (MQ=255)
                                                      ttGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAcg                                                                                                         >  2:2073049/1‑150 (MQ=255)
                                                       tGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAcgc                                                                                                        <  1:4404781/150‑1 (MQ=255)
                                                       tGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAcgc                                                                                                        >  1:5519195/1‑150 (MQ=255)
                                                       tGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGAcgc                                                                                                        >  1:5621868/1‑150 (MQ=255)
                                                          cGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGcc                                                                                                     >  1:2680886/1‑150 (MQ=255)
                                                           gTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGccc                                                                                                    >  1:5183521/1‑150 (MQ=255)
                                                            ttACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCt                                                                                                   >  2:2175493/1‑150 (MQ=255)
                                                             tACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTg                                                                                                  <  1:786557/150‑1 (MQ=255)
                                                             tACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTg                                                                                                  >  1:1670341/1‑150 (MQ=255)
                                                                    tGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCt                                                                                           <  2:1104145/150‑1 (MQ=255)
                                                                         aGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCt                                                                                      >  2:2269029/1‑150 (MQ=255)
                                                                            aaCGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCt                                                                                   >  2:5569217/1‑150 (MQ=255)
                                                                               gaagaaCAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTccc                                                                                <  2:4253588/150‑1 (MQ=255)
                                                                                 agaaCAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCgg                                                                              <  1:2466341/150‑1 (MQ=255)
                                                                                        aTCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGc                                                                       >  1:384129/1‑150 (MQ=255)
                                                                                             tCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACa                                                                  >  1:3497399/1‑150 (MQ=255)
                                                                                              cGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCCTACAg                                                                 >  2:2569262/1‑150 (MQ=255)
                                                                                              cGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCCCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAg                                                                 <  1:4515418/150‑1 (MQ=255)
                                                                                               gAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGa                                                                >  2:2961460/1‑150 (MQ=255)
                                                                                                  gAAATTGAAAAGCTTTGGATAAAATGAAAAAATGCACAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACaa                                                             <  1:3605295/150‑1 (MQ=255)
                                                                                                   aaaTTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAg                                                            >  1:4296576/1‑150 (MQ=255)
                                                                                                   aaaTTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAg                                                            >  2:187643/1‑150 (MQ=255)
                                                                                                   aaaTTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAg                                                            >  1:2799365/1‑150 (MQ=255)
                                                                                                     aTTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCt                                                          <  2:4052672/150‑1 (MQ=255)
                                                                                                       tcaaaaGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCtgt                                                        <  1:3157261/148‑1 (MQ=255)
                                                                                                        gAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCtgtg                                                       >  1:5842866/1‑150 (MQ=255)
                                                                                                         aaaaGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCACTGACACGCCCTGACGGGCTTGTCTGATCCCGGCATCCGCATACAGTCAAGCTGTGa                                                      >  2:599/1‑150 (MQ=38)
                                                                                                             acTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTTCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACAACCGCAGACGCGCCTAAAAGGGCTTGTCTGATCACGGCATCCTATATCTGACAAGTTGTGTCCGt                                                  >  2:5169719/2‑150 (MQ=25)
                                                                                                              cTTTGGAGAAAATGAAAAAAAGCGCAGCTGAAATAGCTGTGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTAACAGACAAGCTGTGACCGtc                                                 <  1:1000454/150‑1 (MQ=255)
                                                                                                                 tGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGGCCGTCTcc                                              >  2:1304980/1‑150 (MQ=255)
                                                                                                                  ggATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCg                                             >  1:2918101/1‑150 (MQ=255)
                                                                                                                   gATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCgg                                            >  2:4560823/1‑150 (MQ=255)
                                                                                                                   gATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCgg                                            >  2:4458512/1‑150 (MQ=255)
                                                                                                                   gATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCgg                                            >  1:4075674/1‑150 (MQ=255)
                                                                                                                     tAAAATGAAAAAAAGCGCAGGTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGACAGCCCCGACACCCACCAAAACCCGCTGACGCACCCAGACCGGCTTGTCTGGTCCCTGCATCCCCTTATAGTCAAGCTGTGACCGTCTCTGGGa                                          >  1:4847920/1‑150 (MQ=37)
                                                                                                                     tAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGa                                          <  2:1592152/150‑1 (MQ=255)
                                                                                                                      aaaaTGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAg                                         >  2:898879/1‑150 (MQ=255)
                                                                                                                          tGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGc                                     <  2:2367416/150‑1 (MQ=255)
                                                                                                                             aaaaaaGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGACAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGGTTGTCTGATCCCGGCATCCGCTTACAGACAAAATGTGACCGTCTCCGGGAGCTGCAtg                                  >  1:1898108/1‑150 (MQ=39)
                                                                                                                                    cgcAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCaga                           <  2:4151704/150‑1 (MQ=255)
                                                                                                                                        gCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGtt                       <  1:111138/150‑1 (MQ=255)
                                                                                                                                        gCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGtt                       <  1:5066113/150‑1 (MQ=255)
                                                                                                                                         cTGAAATAGCTGCTCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGttt                      <  2:4776101/150‑1 (MQ=255)
                                                                                                                                         cTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGttt                      >  1:2242039/1‑150 (MQ=255)
                                                                                                                                          tGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGGTAGCGTCTCCGGGGGCTGCATGTGTCAGGGGtttt                     >  2:1402092/1‑150 (MQ=255)
                                                                                                                                           gAAATAGCATCCCTTTATTGTGACATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCCCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGACAGAGGTTTTc                    <  1:1561960/150‑1 (MQ=255)
                                                                                                                                            aaaTAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCa                   <  2:3956433/150‑1 (MQ=255)
                                                                                                                                             aaTAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCAc                  <  2:3068868/150‑1 (MQ=255)
                                                                                                                                              aTAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCAcc                 >  1:2572868/1‑150 (MQ=255)
                                                                                                                                              aTAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCAcc                 >  1:4629056/1‑150 (MQ=255)
                                                                                                                                                aGCTTCTCTTTTTTtcattttatccaaagcttttcaattccctggagcgatttgttcttcgtttctggacagatcgaaacgacaaacaggaaacaaaggatgttaatcaccgcaaagacccaaaatgtataggcgagtccgaaagaatcg               >  2:3169787‑M2/1‑14 (MQ=255)
                                                                                                                                                aGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGt               >  2:2471310/1‑150 (MQ=255)
                                                                                                                                                aGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGt               >  1:145292/1‑150 (MQ=255)
                                                                                                                                                 gCTGCGCTTTTTTtcattttatccaaagctttacaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcga              >  2:1003200‑M2/1‑13 (MQ=255)
                                                                                                                                                 gCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGGCACCCGCCAACACCGGCTGACCGGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGtc              >  1:3379363/1‑150 (MQ=255)
                                                                                                                                                 gCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCCCCTACAGACAAGCTGTGACCGTCTCCGGGGGCTGCATGGGTGAGCAGTTTTAACCCtc              >  1:3035724/1‑150 (MQ=255)
                                                                                                                                                  cTGCGCTTTTTTtcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgat             <  1:5296616‑M2/150‑139 (MQ=255)
                                                                                                                                                  cTGCGCTTTTTTtcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgat             <  1:4738902‑M2/150‑139 (MQ=255)
                                                                                                                                                    gcgcTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGtcatc           >  2:4669456/1‑150 (MQ=255)
                                                                                                                                                     cgcTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGtcatca          <  2:5067386/150‑1 (MQ=255)
                                                                                                                                                     cgcTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGtcatca          <  2:1498949/150‑1 (MQ=255)
                                                                                                                                                      gcTTTTTTtcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatc         <  1:674218‑M2/150‑143 (MQ=255)
                                                                                                                                                      gcTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGGGCTGCATGTGTCAGAGGTTTTCACCGTCATCAc         >  2:3459396/1‑150 (MQ=255)
                                                                                                                                                       cTTTTTTtcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggtcagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatca        <  1:327860‑M2/150‑144 (MQ=255)
                                                                                                                                                       cTTTTTTtcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatca        <  1:1340524‑M2/150‑144 (MQ=255)
                                                                                                                                                        ttttttGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCg       >  2:5766546/1‑150 (MQ=255)
                                                                                                                                                         ttttttcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatcatt      >  2:4355849‑M2/1‑5 (MQ=255)
                                                                                                                                                         ttttttcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatcatt      <  1:2136506‑M2/150‑146 (MQ=255)
                                                                                                                                                         ttttttcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatcatt      <  2:805134‑M2/150‑146 (MQ=255)
                                                                                                                                                           ttttcaccgtcatcaccgaaacgcgcgagacgaaagggcctcgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttc    >  1:2355581‑M1/1‑3 (MQ=255)
                                                                                                                                                           ttttcaccgtcatcaacgaaacgcgcgagacgaacggccctcgtgttacgcctatttttatagattaatgtcatgataataatggtttcttagacgtcaggtggcactttgcggggaaatgtgcgcggaacccctatttgtttatttttc    <  1:1239001‑M1/150‑148 (MQ=255)
                                                                                                                                                           tttccaccgtcatcaccgaaacgcgcgagacgaaagggccacgtgatacgcctatttttataggttaatgtcatgataataatggtttcttagacgtcaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttc    <  1:892139‑M1/150‑148 (MQ=255)
                                                                                                                                                           tttGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGaaa    <  2:1781214/150‑1 (MQ=255)
                                                                                                                                                            tttcattttatccaaagcttttcaatttcctcgagcgatttgttcttcgtttctggacagatcgtaacgacaaacaggaaacaaaggatgttaatcaccgcaaagatccaaaatgtataggcgagcccgaaagaatcgatcatcattggc   <  2:2757684‑M2/150‑149 (MQ=255)
                                                                                                                                                            ttGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCCCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGACATCACCGAAAc   <  2:1683916/150‑1 (MQ=255)
                                                                                                                                                             tgtgTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAAcg  <  2:5269864/150‑1 (MQ=255)
                                                                                                                                                             |                                                                                                                                                     
GGCTCGCCTATACATTTTGGATCTTTGCGGTGATTAACATCCTTTGTTTCCTGTTTGTCGTTACGATCTGTCCAGAAACGAAGAACAAATCGCTCGAGGAAATTGAAAAGCTTTGGATAAAATGAAAAAAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGTCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAACG  >  pSIJ663_pHT315_araE_xy/11075‑11381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.