mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | pSIJ663_pHT315_araE_xy | = 5534 | 1406 (0.080) | 49 (0.000) +TCCTTTTGCTCA |
41/254 | NT | 3.7% | intergenic (+803/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9884 = | NA (NA) | intergenic (+5153/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5330 | 28407 (1.690) | 58 (0.000) +42 bp |
47/194 | NT | 0.29% | intergenic (+599/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9875 = | NA (NA) | intergenic (+5144/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 4946 | 24590 (1.460) | 3 (0.000) | 3/272 | NT | 0.013% | intergenic (+215/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 4951 = | 23933 (1.450) | intergenic (+220/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 2857 | 27703 (1.640) | 3 (0.000) | 3/274 | NT | 0.011% | intergenic (–/‑121) | –/eryR | –/– |
| ? | pSIJ663_pHT315_araE_xy | 2903 = | 26013 (1.570) | intergenic (–/‑75) | –/eryR | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 1823 | 22632 (1.340) | 5 (0.000) | 4/278 | NT | 0.022% | intergenic (–/‑1155) | –/eryR | –/– |
| ? | pSIJ663_pHT315_araE_xy | 1828 = | 22680 (1.350) | intergenic (–/‑1150) | –/eryR | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 377 | 28101 (1.670) | 6 (0.000) | 6/274 | NT | 0.022% | intergenic (–/‑2601) | –/eryR | –/– |
| ? | pSIJ663_pHT315_araE_xy | 389 = | 27437 (1.650) | intergenic (–/‑2589) | –/eryR | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 240 | 30322 (1.800) | 6 (0.000) | 6/276 | NT | 0.020% | intergenic (–/‑2738) | –/eryR | –/– |
| ? | pSIJ663_pHT315_araE_xy | 248 = | 29650 (1.770) | intergenic (–/‑2730) | –/eryR | –/– | |||||
| * | ? | CP006881 | = 3923061 | 378 (1.060) | 3 (0.010) | 3/278 | NT | 0.79% | coding (929/1209 nt) | U712_20220 | Uncharacterized protein yxaH |
| ? | CP006881 | 3923065 = | 379 (1.070) | coding (925/1209 nt) | U712_20220 | Uncharacterized protein yxaH | |||||
| * | ? | CP006881 | 3234086 = | 378 (1.060) | 3 (0.010) | 3/258 | NT | 0.84% | coding (991/1011 nt) | U712_16665 | Iron(3+)‑hydroxamate import system permease protein fhuG |
| ? | CP006881 | = 3234081 | 355 (1.080) | coding (996/1011 nt) | U712_16665 | Iron(3+)‑hydroxamate import system permease protein fhuG | |||||
| * | ? | CP006881 | = 2471187 | 329 (0.930) | 11 (0.030) | 10/268 | NT | 3.4% | intergenic (‑536/+38) | U712_12610/U712_12615 | Sporulation‑specific extracellular nuclease/Putative DNA recombinase |
| ? | CP006881 | 2519221 = | 304 (0.890) | coding (30/417 nt) | U712_12925 | RNA polymerase sigma‑K factor | |||||