mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 35,960 | A→G | 10.9% | Y39C (TAT→TGT) | U712_00130 → | Protein xpaC |
| RA | CP006881 | 53,413 | G→A | 100% | intergenic (+45/‑94) | U712_00230 → / → U712_00235 | Protein sspF/4‑diphosphocytidyl‑2‑C‑methyl‑D‑erythritol kinase |
| RA | CP006881 | 214,982 | C→T | 100% | A268V (GCC→GTC) | U712_00980 → | Uncharacterized protein skfB |
| RA | CP006881 | 249,190 | A→G | 13.7% | H146R (CAT→CGT) | U712_01165 → | Phosphatidylserine decarboxylase proenzyme |
| RA | CP006881 | 454,851 | A→G | 7.0% | Y134Y (TAT→TAC) | U712_02090 ← | Uncharacterized protein YczH |
| RA | CP006881 | 660,041 | C→A | 5.7% | intergenic (+9/‑150) | U712_03220 → / → U712_03225 | Uncharacterized protein yebC/Uncharacterized protein yebD |
| RA | CP006881 | 916,340 | C→A | 9.8% | intergenic (+12/+67) | U712_21235 → / ← U712_04455 | tRNA‑Leu/Sporulation‑control protein spo0M |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 1,051,313 | T→A | 7.8% | I28N (ATC→AAC) | U712_05170 → | Protoporphyrinogen oxidase |
| RA | CP006881 | 1,091,483:1 | +T | 100% | coding (1163/1326 nt) | U712_05390 ← | NTD biosynthesis operon protein ntdA |
| RA | CP006881 | 1,105,789 | A→G | 16.8% | P983P (CCA→CCG) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,211,770 | A→G | 14.4% | A22A (GCA→GCG) | U712_06040 → | Spore coat protein O |
| RA | CP006881 | 1,219,596 | A→G | 6.0% | A99A (GCT→GCC) | U712_06110 ← | putative N‑acetyltransferase YjcF |
| RA | CP006881 | 1,653,491 | C→T | 19.4% | T112I (ACA→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,712 | G→A | 37.7% | A186T (GCA→ACA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,890 | T→C | 35.0% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,655,978 | Δ1 bp | 35.5% | coding (430/1596 nt) | U712_08515 → | Flagellar M‑ring protein |
| JC | CP006881 | 1,659,332 | Δ141 bp | 22.4% | coding (418‑558/1317 nt) | U712_08530 → | Flagellum‑specific ATP synthase |
| JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 6.6% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,662,223 | C→A | 17.1% | S303* (TCG→TAG) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,663,209 | G→T | 9.0% | intergenic (+11/‑11) | U712_08550 → / → U712_08555 | FlaA locus uncharacterized protein ylxG/Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 2,249,253 | C→A | 5.5% | intergenic (‑42/+352) | U712_11310 ← / ← U712_11315 | Riboflavin biosynthesis protein RibD/Uncharacterized protein ypuD |
| RA | CP006881 | 2,256,420 | T→C | 8.4% | T434T (ACA→ACG) | U712_11370 ← | Stage V sporulation protein AF |
| RA | CP006881 | 2,289,100 | G→T | 100% | P184T (CCG→ACG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,658,622 | C→A | 11.0% | intergenic (+11/+35) | U712_13680 → / ← U712_13685 | Putative serine/threonine‑protein kinase yrzF/Hypothetical Protein |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,896,953 | T→C | 22.1% | K72E (AAG→GAG) | U712_14940 ← | Uncharacterized protein yteU |
| RA | CP006881 | 2,955,315 | C→A | 10.1% | intergenic (‑85/+35) | U712_15230 ← / ← U712_15235 | Uncharacterized protein ytkA/S‑ribosylhomocysteine lyase |
| RA | CP006881 | 2,963,937 | G→A | 5.9% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,963,941 | A→G | 34.9% | intergenic (‑128/+152) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,963,948 | G→A | 41.7% | intergenic (‑135/+145) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 3,010,076 | A→G | 5.0% | L386P (CTG→CCG) | U712_15465 ← | putative MFS‑type transporter yubD |
| RA | CP006881 | 3,285,257:1 | +T | 100% | intergenic (‑77/+143) | U712_16905 ← / ← U712_16910 | Transcriptional repressor sdpR/Glycine betaine/carnitine/choline transport system permease protein opuCD |
| RA | CP006881 | 3,350,164 | G→T | 7.0% | intergenic (+12/+15) | U712_17215 → / ← U712_17220 | Hypothetical Protein/Phenolic acid decarboxylase padC |
| RA | CP006881 | 3,438,133 | T→A | 8.7% | I439K (ATA→AAA) | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,581,989 | A→T | 21.9% | *258K (TAA→AAA) | U712_18400 ← | HTH‑type transcriptional activator mta |
| RA | CP006881 | 3,618,134 | C→T | 17.3% | G20S (GGT→AGT) | U712_18650 ← | putative transporter YwkB |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 89.0% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,767,782 | C→A | 9.6% | intergenic (+8/+22) | U712_19420 → / ← U712_19425 | Aminopeptidase YwaD/GTP pyrophosphokinase ywaC |
| RA | CP006881 | 3,772,635 | A→G | 11.3% | Y334C (TAT→TGT) | U712_19455 → | Protein dltB |
| RA | CP006881 | 3,831,557 | G→A | 28.0% | intergenic (‑6/+90) | U712_19755 ← / ← U712_19760 | Transcription antiterminator LicT/Uncharacterized protein yxiP |
| RA | pSIJ663_pHT315_araE_xy | 2,146 | A→G | 16.2% | intergenic (–/‑832) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,214 | C→T | 44.5% | intergenic (–/‑764) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 166409–171323 | 176266–171335 | 13–9858 | 215 [213] | [211] 218 | U712_21020–[U712_21045] | U712_21020,U712_21025,U712_21030,U712_21035,U712_21040,[U712_21045] |
| * | * | ÷ | CP006881 | 245133 | 246160 | 1028 | 214 [211] | [210] 215 | U712_01140–[U712_01145] | U712_01140,[U712_01145] |
| * | * | ÷ | CP006881 | 1067390 | 1068669 | 1280 | 215 [213] | [212] 216 | [U712_05245]–U712_05250 | [U712_05245],U712_05250 |
| * | * | ÷ | CP006881 | 1148992 | 1150758 | 1767 | 216 [212] | [213] 215 | U712_05685–[U712_05690] | U712_05685,[U712_05690] |
| * | * | ÷ | CP006881 | 1503013 | 1504706 | 1694 | 215 [213] | [210] 215 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562256 | 1566685 | 4430 | 217 [213] | [211] 215 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 3302007–3303322 | 3304612 | 1291–2606 | 215 [209] | [0] 373 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725631 | 3728180 | 2550 | 214 [213] | [209] 215 | U712_19210–[U712_19215] | U712_19210,[U712_19215] |
| * | * | ÷ | CP006881 | 3757658 | 3759729 | 2072 | 214 [211] | [213] 217 | U712_19375 | U712_19375 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 3304613 = | 0 (0.000) | 235 (0.040) +50 bp |
122/178 | NT | 97.9% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 16 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | CP006881 | = 3617989 | 356 (1.000) | 30 (0.080) | 28/278 | NT | 7.5% | coding (203/960 nt) | U712_18650 | putative transporter YwkB |
| ? | CP006881 | 3618570 = | 385 (1.080) | coding (1401/1698 nt) | U712_18655 | putative NAD‑dependent malic enzyme 2 | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 17 (0.000) | 25314 (1.560) | 269/268 | NT | 99.9% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||