mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 87 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633254 | NA (NA) | 4 (0.020) | 3/268 | NT | 1.7% | coding (492/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | = 4633303 | 227 (0.960) | coding (443/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | = 4633095 | 281 (1.150) | 4 (0.020) | 3/262 | NT | 1.4% | noncoding (5/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633163 | 306 (1.320) | noncoding (73/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4623282 | 272 (1.110) | 3 (0.010) | 3/264 | NT | 1.1% | coding (836/1017 nt) | lplA | lipoate‑protein ligase A |
| ? | NC_000913 | = 4623330 | 275 (1.180) | coding (788/1017 nt) | lplA | lipoate‑protein ligase A | |||||
| * | ? | NC_000913 | = 4614411 | 249 (1.010) | 8 (0.030) | 3/274 | NT | 3.0% | noncoding (155/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 4614528 | 276 (1.140) | noncoding (272/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 4583137 | 197 (0.800) | 5 (0.020) | 4/266 | NT | 2.5% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 201 (0.860) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 216 (0.880) | 10 (0.040) | 8/260 | NT | 4.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 206 (0.900) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 221 (0.900) | 6 (0.030) | 4/260 | NT | 2.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 206 (0.900) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4527506 = | 243 (0.990) | 4 (0.020) | 3/258 | NT | 1.7% | coding (32/633 nt) | sgcE | putative epimerase |
| ? | NC_000913 | 4527570 = | 229 (1.010) | coding (411/432 nt) | sgcA | putative phosphotransferase enzyme IIA component | |||||
| * | ? | NC_000913 | = 4424912 | 231 (0.940) | 4 (0.020) | 3/268 | NT | 1.7% | intergenic (‑121/‑206) | yjfY/rpsF | YhcN family protein, periplasmic/30S ribosomal subunit protein S6 |
| ? | NC_000913 | = 4424943 | 227 (0.960) | intergenic (‑152/‑175) | yjfY/rpsF | YhcN family protein, periplasmic/30S ribosomal subunit protein S6 | |||||
| * | ? | NC_000913 | 4409589 = | 284 (1.160) | 12 (0.050) | 4/264 | NT | 4.1% | coding (315/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4409625 = | 292 (1.250) | coding (351/732 nt) | rlmB | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||