mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4233833 = | 185 (0.960) | 4 (0.020) | 3/258 | NT | 2.3% | coding (76/1650 nt) | pgi | glucosephosphate isomerase |
| ? | NC_000913 | 4233869 = | 164 (0.920) | coding (112/1650 nt) | pgi | glucosephosphate isomerase | |||||
| * | ? | NC_000913 | = 4094350 | 225 (1.170) | 7 (0.050) | 5/196 | NT | 4.0% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 174 (1.290) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | = 4081273 | 189 (0.980) | 4 (0.020) | 3/260 | NT | 2.2% | coding (588/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| ? | NC_000913 | = 4081294 | 183 (1.020) | coding (567/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit | |||||
| * | ? | NC_000913 | 3876092 = | 291 (1.510) | 9 (0.050) | 4/268 | NT | 3.2% | coding (655/657 nt) | yidX | putative lipoprotein |
| ? | NC_000913 | 3876143 = | 257 (1.390) | coding (810/813 nt) | yidA | sugar phosphate phosphatase | |||||
| * | ? | NC_000913 | = 3854856 | 276 (1.430) | 5 (0.030) | 3/272 | NT | 1.7% | coding (935/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | = 3854899 | 308 (1.640) | coding (978/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3798233 | 220 (1.140) | 4 (0.020) | 3/252 | NT | 1.9% | intergenic (+26/+6) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798235 | 213 (1.220) | intergenic (+28/+4) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | 3607569 = | 242 (1.260) | 4 (0.020) | 3/264 | NT | 1.7% | coding (1119/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | NC_000913 | 3607684 = | 246 (1.350) | coding (1234/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | NC_000913 | = 3185971 | 193 (1.000) | 4 (0.020) | 4/274 | NT | 2.1% | intergenic (+6/‑90) | ygiL/yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | NC_000913 | = 3185993 | 185 (0.980) | intergenic (+28/‑68) | ygiL/yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein | |||||
| * | ? | NC_000913 | = 2904039 | 259 (1.350) | 3 (0.020) | 3/226 | NT | 1.4% | intergenic (+665/+708) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904345 = | 224 (1.430) | intergenic (+971/+402) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | 2422239 = | 178 (0.930) | 3 (0.020) | 3/266 | NT | 1.9% | coding (532/894 nt) | yfcH | putative NAD‑dependent nucleotide‑sugar epimerase |
| ? | NC_000913 | 2422290 = | 148 (0.800) | coding (583/894 nt) | yfcH | putative NAD‑dependent nucleotide‑sugar epimerase | |||||