| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3083831 = | 101 (1.250) | 5 (0.070) | 5/278 | 9.5 | 4.8% | intergenic (‑34/+104) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | 3083868 = | 102 (1.350) | intergenic (‑71/+67) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3083984‑3083831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagggttGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA > NC_000913/3083868‑3084014 AAGAGTTCGATGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA > 2:447979/1‑149AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCATCGTCGGGCCTAACGACGCGGAA > 1:55684/1‑149AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATATAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAA < 2:263623/149‑1AAGAGTTCGAGGCAGGATTGTACGGTAATACTTATCTTGAAGTTGAGTAAGTCCTGTGTTACTTGACTCCGCTTAATTTAGCGGTGATAATCCGCCACAATTAATTGCGACAAATCCACCCCTTCCTCGTCGGGCCTAACGACGCGGAA < 1:887575/149‑1 AGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATTATCAGCGACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAG > 2:602849/1‑149 TTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT > 2:817548/1‑149 TTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT > 2:248576/1‑149 ACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGCAATATCACCGCTAAATTAAGCGGATTCCAGTAACACAGGACTTGCTCATCTTCAAGCGAAGTATAACCGTACAAACCT > 1:894829/1‑149 ATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCT > 1:500118/1‑149 CCAACCCTTCCTCGTCGGGCCTAACGCCGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCG > 1:119771/1‑149 CCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTTAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTC > 2:1240372/1‑149 CTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCT > 1:326357/1‑149 GAAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG > 2:24332/1‑149 GAAGGGTTGGATTTGTCACAAAAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAG < 2:488711/149‑1 AAGGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGC < 1:88373/149‑1 GGGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGTTAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCAT < 2:103317/149‑1 GGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATC < 1:418941/149‑1 GGTTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATC < 1:414095/149‑1 TTGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA > 2:176166/1‑149 AAGAGTTCGAGGCAGGTTTGTACGGTTATACTTATCTTGAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3083984‑3083831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagggttGGATTTGTCACAATAAATTGTGGCGGATTATCACCGCTAAATTAAGCGGATTCAAGTAACACAGGACTTACTCATCTTCAAGATAAGTATAACCGTACAAACCTGCCTCGAACTCTTCAAGGAACTGTTGTTGCAGTTCAGCATCAA > NC_000913/3083868‑3084014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |