mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 89 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583137 | 600 (0.910) | 9 (0.010) | 7/266 | NT | 1.4% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 689 (1.100) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4583130 | 583 (0.890) | 4 (0.010) | 4/272 | NT | 0.63% | intergenic (‑82/+119) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583231 | 691 (1.070) | intergenic (‑183/+18) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 547 (0.830) | 9 (0.010) | 9/260 | NT | 1.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 564 (0.920) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4534139 | 713 (1.080) | 11 (0.020) | 4/258 | NT | 1.6% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 677 (1.110) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4531319 | 658 (1.000) | 5 (0.010) | 3/272 | NT | 0.73% | coding (333/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | = 4531360 | 714 (1.110) | coding (292/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | 4524790 = | 660 (1.000) | 3 (0.000) | 3/258 | NT | 0.50% | coding (221/906 nt) | yjhH | putative lyase/synthase |
| ? | NC_000913 | 4524835 = | 583 (0.960) | coding (176/906 nt) | yjhH | putative lyase/synthase | |||||
| * | ? | NC_000913 | 4411257 = | 655 (1.000) | 4 (0.010) | 4/258 | NT | 0.68% | intergenic (+6/‑45) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein |
| ? | NC_000913 | 4411284 = | 555 (0.910) | intergenic (+33/‑18) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein | |||||
| * | ? | NC_000913 | 4409174 = | NA (NA) | 7 (0.010) | 4/248 | NT | 1.3% | noncoding (22/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4409235 = | 549 (0.940) | noncoding (83/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4171625 | 381 (0.580) | 18 (0.030) | 7/266 | NT | 4.7% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4168341 | 340 (0.520) | 8 (0.010) | 3/258 | NT | 2.6% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 284 (0.470) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||