mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 107,554 | G→T | 13.5% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| RA | 151,688 | C→G | 7.0% | V182L (GTA→CTA) | yadL ← | putative fimbrial‑like adhesin protein |
| RA | 164,524 | A→T | 5.5% | K807M (AAG→ATG) | hrpB → | putative ATP‑dependent helicase |
| RA | 164,581 | A→C | 23.2% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,594 | T→G | 5.2% | intergenic (+60/‑136) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,613 | T→A | 11.9% | intergenic (+79/‑117) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| RA | 238,532 | C→A | 8.2% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 238,535 | G→T | 5.6% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 267,472 | C→G | 5.4% | P178P (CCG→CCC) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 299,984 | T→G | 5.3% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 349,717 | T→C | 5.8% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 357,624 | T→G | 5.3% | intergenic (+170/+167) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 361,323 | G→C | 10.6% | R180G (CGG→GGG) | lacA ← | thiogalactoside acetyltransferase |
| RA | 454,873 | C→G | 7.2% | intergenic (+84/‑260) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 580,727 | G→T | 9.8% | intergenic (‑282/‑107) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 708,015 | T→A | 6.5% | intergenic (+258/‑319) | glnS → / → chiP | glutamyl‑tRNA synthetase/chitoporin, uptake of chitosugars |
| RA | 780,841:1 | +T | 5.2% | intergenic (+1/‑2) | valT → / → lysW | tRNA‑Val/tRNA‑Lys |
| RA | 838,921 | T→A | 5.9% | H96L (CAT→CTT) | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 843,205 | T→G | 7.0% | W292G (TGG→GGG) | rlmF → | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| RA | 863,966 | A→C | 8.3% | T109P (ACC→CCC) | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 915,226 | T→G | 8.3% | intergenic (‑369/+126) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 1,122,286 | T→G | 50.9% | N108H (AAC→CAC) | pyrC ← | dihydro‑orotase |
| RA | 1,151,888 | T→G | 6.8% | intergenic (+37/‑51) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,286,965 | A→T | 9.1% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,122 | T→G | 9.1% | noncoding (115/171 nt) R19R (AGG→CGG) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,351,228 | G→C | 7.8% | intergenic (‑189/+179) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,389,007 | A→C | 6.3% | E26D (GAA→GAC) | ycjG → | L‑Ala‑D/L‑Glu epimerase |
| RA | 1,466,504 | A→G | 5.4% | pseudogene (1113/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,629,498 | T→G | 5.9% | L472F (TTA→TTC) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,708,709 | T→A | 8.1% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,758 | G→C | 5.7% | E614Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,805 | T→A | 11.6% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,814 | A→T | 7.7% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,708,844 | C→G | 8.3% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,720,364 | G→T | 7.5% | intergenic (+21/+26) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,864,768 | T→C | 5.3% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,910,574 | T→G | 5.3% | L100R (CTT→CGT) | yebQ → | putative transporter |
| RA | 1,964,035 | T→G | 7.0% | K339T (AAA→ACA) | flhA ← | putative flagellar export pore protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,008,698 | T→G | 6.0% | I141S (ATT→AGT) | yedE → | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,234 | C→A | 16.4% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,245 | G→T | 14.0% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,229,177 | A→C | 12.5% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,304,649 | C→T | 7.3% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,680 | T→C | 8.0% | intergenic (+287/+428) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,304,688 | A→G | 9.9% | intergenic (+295/+420) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,013 | A→G | 5.5% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,085 | A→G | 5.5% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 5.5% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 5.3% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,411,241 | C→A | 5.4% | A38S (GCA→TCA) | yfbS ← | putative transporter |
| RA | 2,411,263 | A→C | 7.6% | A30A (GCT→GCG) | yfbS ← | putative transporter |
| RA | 2,470,427 | C→A | 19.7% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,470,431 | G→T | 8.1% | R434I (AGA→ATA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,470,436 | C→A | 15.3% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,470,439 | G→T | 6.4% | D437Y (GAC→TAC) ‡ | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,470,441 | C→A | 7.8% | D437E (GAC→GAA) ‡ | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,481,804 | G→T | 8.8% | P125T (CCA→ACA) | emrY ← | putative multidrug efflux system |
| RA | 2,639,280 | C→A | 15.9% | E2* (GAA→TAA) | yfgM ← | ancillary SecYEG translocon subunit; putative anti‑RcsB factor |
| RA | 2,718,318 | T→G | 7.8% | T71P (ACG→CCG) | yfiF ← | putative methyltransferase |
| RA | 2,725,844 | G→T | 5.4% | intergenic (‑98/+225) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,817,916 | T→G | 5.3% | intergenic (‑56/+143) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 3,046,050 | T→G | 7.6% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,056 | T→A | 8.2% | intergenic (‑155/+112) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,070 | T→A | 10.1% | intergenic (‑169/+98) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,054,888 | A→T | 9.6% | V186E (GTA→GAA) | ygfB ← | UPF0149 family protein |
| RA | 3,087,396 | T→G | 6.8% | F231V (TTC→GTC) | metK → | S‑adenosylmethionine synthetase |
| JC JC | 3,179,611 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | 12.1% | intergenic (+15/‑128) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,239,609 | T→G | 6.8% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,269,956 | T→C | 5.1% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,101 | C→A | 6.7% | intergenic (+499/+115) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,143 | C→T | 6.4% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,368,834 | A→T | 5.8% | A336A (GCA→GCT) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,423,372 | A→T | 10.3% | intergenic (+178/+51) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,375 | G→A | 9.8% | intergenic (+181/+48) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 5.1% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 5.0% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,455,691 | C→A | 6.1% | F38L (TTC→TTA) | gspC → | general secretory pathway component, cryptic |
| RA | 3,504,880 | A→C | 6.1% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,537,327 | G→T | 7.1% | intergenic (+39/‑58) | greB → / → yhgF | transcript cleavage factor/putative transcriptional accessory protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,608,671 | A→C | 6.3% | intergenic (+22/+80) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,608,695 | C→G | 11.1% | intergenic (+46/+56) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,728,109 | A→C | 7.0% | D421E (GAT→GAG) | xylB ← | xylulokinase |
| RA | 3,728,120 | T→G | 7.2% | T418P (ACG→CCG) | xylB ← | xylulokinase |
| RA | 3,728,125 | T→G | 8.8% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
| RA | 3,728,127 | A→C | 7.1% | D415E (GAT→GAG) | xylB ← | xylulokinase |
| RA | 3,781,022 | T→G | 9.3% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,032 | T→A | 13.7% | intergenic (+15/‑183) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,038 | T→A | 18.4% | intergenic (+21/‑177) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,075 | T→G | 7.2% | intergenic (+58/‑140) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,158 | A→C | 5.4% | intergenic (+141/‑57) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,815,809 | Δ1 bp | 38.3% | intergenic (‑41/+25) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| JC | 3,815,859 | Δ82 bp | 27.2% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,828,980 | A→C | 5.7% | Q12H (CAA→CAC) | xanP → | xanthine permease |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,902,785 | G→T | 8.6% | S306Y (TCC→TAC) | bglB ← | cryptic phospho‑beta‑glucosidase B |
| RA | 3,959,457 | T→G | 5.6% | intergenic (+12/+75) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,482 | A→C | 6.3% | intergenic (+37/+50) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,515 | T→A | 9.1% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 4,005,308 | A→T | 5.2% | A149A (GCA→GCT) | pldA → | outer membrane phospholipase A |
| RA | 4,070,469 | A→T | 7.2% | intergenic (‑68/+46) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,086,948 | C→A | 5.3% | intergenic (+99/‑54) | fdhD → / → yiiG | formate dehydrogenase formation protein/DUF3829 family lipoprotein |
| RA | 4,181,279 | G→T | 14.7% | R12L (CGT→CTT) | rpoB → | RNA polymerase, beta subunit |
| JC | 4,183,399 | Δ3 bp | 71.7% | coding (2155‑2157/4029 nt) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,187,838 | A→G | 10.6% | D830G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,296,060 | C→T | 29.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,397 | T→C | 5.0% | intergenic (+603/+39) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,948 | A→G | 5.8% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,392,471 | A→C | 5.2% | intergenic (+36/‑1) | glyV → / → glyX | tRNA‑Gly/tRNA‑Gly |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,412,794 | A→T | 6.8% | L136F (TTA→TTT) | yjfM → | DUF1190 family protein |
| RA | 4,596,823 | A→C | 7.8% | E278D (GAA→GAC) | lgoD → | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase |
| RA | 4,612,260 | A→T | 5.9% | S45C (AGT→TGT) | ytjA → | uncharacterized protein |
| RA | 4,633,353 | A→C | 5.9% | D131E (GAT→GAG) | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| RA | 4,633,634 | C→T | 100% | E38K (GAG→AAG) | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772983 | 774240 | 1258 | 340 [335] | [330] 341 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037677 | 1039350 | 1674 | 340 [336] | [335] 340 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 3423722–3424561 | 3424561 | 1–840 | 340 [325] | [332] 341 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15574 | NA (NA) | 4 (0.010) | 3/272 | NT | NA | noncoding (188/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 15651 | NA (NA) | noncoding (265/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 16653 | NA (NA) | 12 (0.020) | 8/264 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 7 (0.010) | 6/266 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 14 (0.020) | 7/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274674 = | NA (NA) | 4 (0.010) | 3/262 | NT | NA | noncoding (476/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274771 = | NA (NA) | noncoding (379/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274692 = | NA (NA) | 7 (0.010) | 4/270 | NT | NA | noncoding (458/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274732 = | NA (NA) | noncoding (418/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 8 (0.010) | 6/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 4 (0.010) | 4/276 | NT | 21.1% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4640559 | 15 (0.020) | intergenic (+17/‑383) | yjjY/yjtD | uncharacterized protein/putative methyltransferase | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 9 (0.010) | 5/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 781369 = | 408 (0.620) | 71 (0.110) +GAG |
28/272 | NT | 15.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 412 (0.630) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 1097426 = | NA (NA) | 12 (0.020) | 8/274 | NT | 8.1% | intergenic (+597/+139) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097455 = | 139 (0.210) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 262 (0.400) | 259 (0.450) | 121/246 | NT | 52.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 236 (0.410) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 261 (0.400) | 288 (0.500) | 133/246 | NT | 55.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 236 (0.410) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 467 (0.730) | 173/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2066867 | 11 (0.020) | 4 (0.010) | 4/278 | NT | 26.7% | noncoding (487/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102412 | NA (NA) | noncoding (532/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 28 (0.040) | 11/266 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2817942 | 466 (0.710) | 25 (0.040) | 18/238 | NT | 6.1% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818492 = | 375 (0.670) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | NC_000913 | 3423369 = | 441 (0.670) | 52 (0.080) | 18/278 | NT | 10.5% | intergenic (+175/+54) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | NA (NA) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 6 (0.010) | 5/266 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||