| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097287 = | 13 (0.130) | 4 (0.040) | 3/262 | NT | 22.7% | intergenic (+458/+278) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097464 = | 15 (0.160) | intergenic (+635/+101) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
CCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGC > NC_000913/1097139‑1097434 | gtgtatccggcagcgtttcgggggttcgaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGc > 2:273983‑M1/149‑150 (MQ=255) ccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa < 2:1136114/150‑1 (MQ=32) ccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa < 2:1136066/150‑1 (MQ=32) ccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa < 1:691858/150‑1 (MQ=32) atacggcaccgtatcgggggttggaatccccccctccccgccatatttaaagaagcgctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgtgaagccccgaccggggttcgacaactggcgacaGCCAGt > 2:1604537‑M1/145‑150 (MQ=255) atacggcaacgtatcgggggttcgaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGt > 2:1490482‑M1/145‑150 (MQ=255) atacggcaacgtatcgggggttcgaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGt < 1:631298‑M1/6‑1 (MQ=255) atacggcaacgtatcgggggttcgaatccccccctcaccgccatatttaaagaagagcgcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGt > 1:1531678‑M1/145‑150 (MQ=255) cGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGtt < 2:1391936/150‑1 (MQ=17) acggcaacgtatcgggggttcgaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGTTg > 2:1396395‑M1/143‑150 (MQ=255) gtgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa > 1:898197/1‑150 (MQ=32) tgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAc > 2:826261/1‑150 (MQ=17) gCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcc < 1:687219/150‑1 (MQ=32) cAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAccc > 2:1315624/1‑150 (MQ=32) ttgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGtt > 1:745049‑M1/55‑61 (MQ=255) ttgcacacaccggggggatgagaagccccgaccggggttcgacaactggcgacaGCCAGtt < 2:745049‑M1/7‑1 (MQ=255) acaccggggggatgagaagccccgaccggggttcgacaactggcgacaGc < 2:1708502‑M1/2‑1 (MQ=255) acaccggggggatgagaagccccgaccggggttcgacaactggcgacaGc > 1:1708502‑M1/49‑50 (MQ=255) ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt < 1:1432756/150‑1 (MQ=34) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc > 1:468548/1‑150 (MQ=34) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc < 2:976188/150‑1 (MQ=34) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgc < 1:448335/150‑1 (MQ=34) aCGGTCTGGCCAACGGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCCGCCCCCCGGTGTGTGCAATCTACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgc < 2:1605341/150‑1 (MQ=11) ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctc > 1:264051/1‑150 (MQ=34) atcaactggcttaaGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCTATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTg > 2:1009586‑M1/15‑150 (MQ=255) caactggcgacaGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt > 2:517383‑M1/13‑58 (MQ=255) caactggcgacaGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 1:517383‑M1/46‑1 (MQ=255) aactggcgacaGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGGGTGTGCAATATACGAAAAAAAAG‑CCCGTACTGTCGTACGAGCTCTTCTTTAAATAAGGCGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg < 1:1009586‑M1/139‑1 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg > 1:745023/1‑150 (MQ=34) tGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa > 1:221736/1‑150 (MQ=34) tGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGccc > 2:1187075/1‑150 (MQ=34) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGACCCATA‑TTTCGGGAGAGCGCTGATTTTAATATGGCGGGGGGGGGGGGGTTGTCGCGGTTCGCTCGCCCACCGGGGAGacccc > 1:941382/1‑148 (MQ=2) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa > 1:941318/1‑120 (MQ=31) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa > 1:832182/1‑120 (MQ=31) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa < 2:46291/120‑1 (MQ=31) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa > 1:46291/1‑120 (MQ=31) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa < 2:832182/120‑1 (MQ=31) tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa < 2:941318/120‑1 (MQ=31) GCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 2:216603‑M1/46‑1 (MQ=255) GCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt > 1:216603‑M1/1‑46 (MQ=255) GCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTa < 2:999219‑M1/79‑1 (MQ=255) GCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCACCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTa > 1:999219‑M1/1‑79 (MQ=255) | CCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAG‑CCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGC > NC_000913/1097139‑1097434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |