| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097287 = | 13 (0.130) | 4 (0.040) | 3/262 | NT | 22.7% | intergenic (+458/+278) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097464 = | 15 (0.160) | intergenic (+635/+101) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACAC > NC_000913/1097316‑1097613 | tcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACACGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGACCAACTGGCTg > 2:675597/1‑150 (MQ=17) aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc > 1:209381/1‑150 (MQ=32) aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTACGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCtcgc > 1:1456782/1‑147 (MQ=17) aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAATTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc > 1:1283720/1‑150 (MQ=17) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGcc > 2:311246/1‑150 (MQ=31) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCGGCGCTCGCCCAGCGGGCAGCCCGCTCACTGCGTGCACGGTCTGTCCAACTGGCtcaagcc > 2:311253/1‑144 (MQ=11) ccccGGTGTGTGCAATATACCAAAAAAAAGCCCGTACTATCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa < 2:624890/150‑1 (MQ=11) ccgcagggcgagcgaagcgagtcaatccccccctccccgccttatttaaagaagagctcgtacgacagtacgggcttttttttcgtatattgcacaccccggggggatgagaagccccgaccggggttcgacaactggcTGTCGCCAGtt < 1:1009586‑M2/11‑1 (MQ=255) cagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatatagcacacaccggggggatgagaagccccgaccggggttcgacaactggcTTAAGCCAGttgat > 2:1009586‑M2/137‑148 (MQ=255) gtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATCTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa < 1:1309364/150‑1 (MQ=11) gtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa < 1:1168801/150‑1 (MQ=11) tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAc > 1:2065/1‑150 (MQ=31) tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCAGTCGCCAGTTGTCGAAc > 1:1166615/1‑150 (MQ=14) gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCGTCGCTCGCCCGGCGGGCCGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcc > 2:1616131/1‑150 (MQ=12) atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg < 1:1314757/150‑1 (MQ=32) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGt < 1:583141/150‑1 (MQ=31) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGt < 1:583163/150‑1 (MQ=31) acacaccggggggatgagaagccccgaccggggttcgacaactggcTGTCGCCAGTTg < 1:517383‑M2/12‑1 (MQ=255) acacaccggggggatgagaagccccgaccggggttcgacaactggcTGTCGCCAGTTg > 2:517383‑M2/47‑58 (MQ=255) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa > 2:631298/1‑150 (MQ=32) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAATCCCCTACATTCGTACGAGCTCGTCGTTAAATATTGCGGTGA‑GGGGGGATTCGAAccccc > 1:324610/1‑150 (MQ=11) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCAACCCCCCCGTGTGTGCAATATACGAAAAAAAAGACCGTACATTCGTACGAGCGCGTCTTTAAATAAGGCGGTGA‑GGGGGGATTAGAAccccc > 1:324639/1‑150 (MQ=11) ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:301831/150‑1 (MQ=37) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGa < 1:814447/150‑1 (MQ=38) tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCCGGGTGTGCAATATAAGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTATTTAAATATGGCGGTGTGGGGGGGGTTCGAACCCCCCATACCTTg > 1:845012/1‑150 (MQ=14) tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGGGTGTGCAATATAAGAAAAAAAAGCCCCTACATTAGTACGAGCTCTGCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc > 1:28724/1‑150 (MQ=14) caactggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGt > 2:1396395‑M2/9‑150 (MQ=255) aactggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 2:745049‑M2/54‑1 (MQ=255) aactggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa > 1:745049‑M2/8‑61 (MQ=255) actggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGCGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtat > 1:1531678‑M2/7‑150 (MQ=255) actggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtat > 2:1490482‑M2/7‑150 (MQ=255) actggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtat < 1:631298‑M2/144‑1 (MQ=255) actggcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCACATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCGCTTCTTTAAATATGGCGGGGAGGGGGGGATTCCAACCCCCGATACGGTGCCGtat > 2:1604537‑M2/7‑150 (MQ=255) gcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgt < 2:1708502‑M2/48‑1 (MQ=255) gcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtgt > 1:1708502‑M2/3‑50 (MQ=255) gcTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAAACGCTGCCGGATacac > 2:273983‑M2/3‑150 (MQ=255) tGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacacac > 2:484619/1‑150 (MQ=255) | TCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACAC > NC_000913/1097316‑1097613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |