New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1789000 =	50 (0.840)	3 (0.050)	3/266	NT	5.6%	coding (566/1047 nt)	aroH	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
	?	NC_000913	1789053 =	53 (0.930)					coding (619/1047 nt)	aroH	3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible

CGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCGGCAAAAAACC  >  NC_000913/1788853‑1789147                                                                                                                                                    |                                                                                                                                                    aaactcgtgcagcgtatcgcaggctgcggcgatatcatcggcatgataattccgttatttgccgccacgcaaaataatgtggccatacgggttgccgctggtctgatagatggtcctctgaccatttttgtatggcgagaggaccatat                                                                                                                                                    <  1:245592‑M1/2‑1 (MQ=255)   actcgtgcagcgtatcgcaggcttcggcgatatcatcggcatgataattcggttttttgccgcaacgcataataatgtggccatacgggttgccgctggtctgatagatcgtcatctgaccatttttgtctggcgagaggaacatATgg                                                                                                                                                  >  2:498374‑M1/146‑149 (MQ=255)     cGAGGTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCa                                                                                                                                                >  2:923909/1‑149 (MQ=255)          tCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATAcg                                                                                                                                           <  1:884425/149‑1 (MQ=255)               gATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAt                                                                                                                                      >  1:731947/1‑149 (MQ=255)                     gTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCtgt                                                                                                                                <  2:306048/149‑1 (MQ=255)                     gTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATACACCGCGAAATGGCTTCGGCACTCTCCTTTCCGGTAGGTTTTAAAAATGGTACAGATGGCAATACGCGGATTGCagt                                                                                                                                >  2:887987/1‑149 (MQ=255)                                 tttATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCcg                                                                                                                    >  1:389265/1‑149 (MQ=255)                                    catcggcatgataattcggttttttgccgccacgcataataatgtggccatacgggttgccgctggtctgatagatggtcatctgaccatttttgtctgtcgagaggaacatATGGCTGG‑CGCGGATTGCTGTGGATGCTATCCGCGCa                                                                                                                >  1:27673‑M1/113‑149 (MQ=255)                                     ttGCTTATTTAATCAGTTGGTGCGCGATTGGCGAACGTACTACCGAAATTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCTGTAGGTTTTAAAAATGGTAGCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCa                                                                                                                <  1:403290/149‑1 (MQ=255)                                        cTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGcc                                                                                                             >  2:469152/1‑149 (MQ=255)                                                  cAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCgccagcc                                                                                                   <  1:393402/149‑1 (MQ=255)                                                    gTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAGATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGAGGATTGCTGTGGATGCTATACGCGCAGCCCGCGCCAGCCat                                                                                                 >  2:214710/1‑149 (MQ=255)                                                    gTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATAAGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCat                                                                                                 >  2:634704/1‑149 (MQ=255)                                                     ttGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCAACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCata                                                                                                >  2:264245/1‑149 (MQ=255)                                                      gttttttgccgcaacgcataataatgtggccatacgggttgccgctggtctgttagatggtcatctgaccatttttgtctggcgagaggaacatATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCatat                                                                                               >  2:913765‑M1/95‑149 (MQ=255)                                                        tttttgccgccacgcataatactgtggccatacgggttgccgctggtctgatagatggtcatctgaccagttttgtctggcgagaggaacatATGGCAATACGCGGATTGCGGGGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGt                                                                                             >  1:630063‑M1/93‑149 (MQ=255)                                                        gggCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGCATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGt                                                                                             >  1:68000/1‑149 (MQ=255)                                                          gcgcGATTGGCGCACGTACTACCGAAAGGCAGATCCCCCGCGAAATGGCTTCGGCACTCTCCTGGCCGGTAGGTTTTAAAACTGGTACCGATGGCACTACGCGGATGGCTGTGGAGGCTATCCGCGCAGCCCGCGCCAGCCAGATGtgc                                                                                           >  1:233872/1‑147 (MQ=255)                                                               aTTGGCGCACGTACTACCGAAAGGCAGCACCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCAGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCtctc                                                                                      <  2:268945/149‑1 (MQ=255)                                                                   gcgcACGTACTACCGAAAGTCAGATCCACCGCGAAATTGCTTAGGCACTCTCCTGTCCGGTATGTTTTAAAAATGGTACAGATGGCAATAAGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCa                                                                                  <  2:458639/149‑1 (MQ=255)                                                                    cgcACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCAATCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGAAGCTATCCGCGCAGCCCGCGCCAGCCATATGGTCCTCTCGCCAg                                                                                 <  2:677671/149‑1 (MQ=255)                                                                     gcccGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCAGATGTTACTGTCGccgcc                                                                                >  1:706362/4‑146 (MQ=255)                                                                            ctacCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAAt                                                                         <  1:469152/149‑1 (MQ=255)                                                                               ccGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGCTGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGt                                                                      >  1:297019/1‑149 (MQ=255)                                                                               ccGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACTCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATgga                                                                      >  2:773806/1‑148 (MQ=255)                                                                               ccGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATggg                                                                      >  1:33238/1‑148 (MQ=255)                                                                               ccGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGt                                                                      >  1:301740/1‑149 (MQ=255)                                                                               ccGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGt                                                                      >  2:131041/1‑149 (MQ=255)                                                                                cGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                                     <  2:390025/149‑1 (MQ=255)                                                                                  aaaGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAg                                                                   <  1:126938/149‑1 (MQ=255)                                                                                   aaGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGa                                                                  <  1:923909/149‑1 (MQ=255)                                                                                     gTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGATTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATg                                                                >  2:847876/1‑149 (MQ=255)                                                                                       cacaTCCACCGCGAAAGGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGAc                                                              <  2:431747/146‑1 (MQ=255)                                                                                         gATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATAAGTTCCTCTCGCCAGACAAAAATGGTCAGATGCCCa                                                            >  1:507341/1‑149 (MQ=255)                                                                                          aTCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAt                                                           >  1:392743/1‑149 (MQ=255)                                                                                              aCCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCCTCTAt                                                       >  1:72087/1‑149 (MQ=255)                                                                                               ccGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATc                                                      <  2:587078/149‑1 (MQ=255)                                                                                                cgcgAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGAGGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCa                                                     <  1:981697/149‑1 (MQ=255)                                                                                                 gcgAAATGGCTTCGGCACTCTCCTGTCCGGTCGGTTTTAAAAATGGTACCGATGGCAATTCGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAATAATGGTCAGATGACCATCTATCAg                                                    <  1:971290/149‑1 (MQ=255)                                                                                                 gcgAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAg                                                    >  1:254736/1‑149 (MQ=255)                                                                                                  cgAAATGGCTTCGGCACTCTCCTGTCCGGAAGTTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATCCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGa                                                   <  1:738547/149‑1 (MQ=255)                                                                                                       tGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGc                                              <  1:770744/149‑1 (MQ=255)                                                                                                               gCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAccc                                      >  2:749401/1‑149 (MQ=255)                                                                                                                cACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGCAATGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCACGCCAGACAAAAATGGTCACATGACCAACTAACAGACCAGCGGCCACCCg                                     >  2:245592/1‑149 (MQ=255)                                                                                                                   tctcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAt                                  <  2:743839/149‑1 (MQ=255)                                                                                                                        tGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCca                             >  2:284194/1‑149 (MQ=255)                                                                                                                           ccGGTAGGTTTTAAAAATGGTACCGATGTCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACat                          <  1:887987/149‑1 (MQ=255)                                                                                                                            cGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCACCCCGTATGGCCACatt                         >  1:99728/1‑149 (MQ=255)                                                                                                                            cGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCAAGCCATATCTTCCTCTCGCCAGACAAAAATCTTCAGATGCCCATCTATCAGCCCAGCGGCAACCCGTATGGCCACatt                         >  2:801937/1‑149 (MQ=255)                                                                                                                             ggTAGGTTTTAAAAATGGTCCCGATGGCAATACTCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCTCCAGCCATATGTTCCTCTCGCCAGTCACAAATGGTCAGATGACAATCTATCAGACCAGAGGCACCCCGTATGGCCACatta                        >  1:847052/1‑149 (MQ=255)                                                                                                                                   ttttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCACACCAGCGGCAACCCGTATGGCCACAATATTATGc                  >  2:617669/1‑149 (MQ=255)                                                                                                                                    tttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATG‑TCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGt                >  1:129986/1‑149 (MQ=255)                                                                                                                                     tttaaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCCACCCGTATGGCCCCAGTATTATGCGt                >  2:325776/4‑149 (MQ=255)                                                                                                                                         aaaTGGTACCGATGGCAATTCGAGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAATATGGGCAGATGACCATCTATCAGACCAGCTGCAACCCGTATGGCCACATTATTATGCGTggcg            <  1:219413/149‑1 (MQ=255)                                                                                                                                                 ccGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAACTATCAGACCAGCGGCAACCCGTATGGCCACATTAGTATGCGTGGCGGCaaaaaa    >  1:319279/1‑149 (MQ=255)                                                                                                                                                   gATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCGGCAAAAAAcc  <  2:731947/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGACCGAGTTCCTCGATATGGTGACCGGTCAGTTTATTGCTGATTTAATCAGTTGGGGCGCGATTGGCGCACGTACTACCGAAAGTCAGATCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCGGCAAAAAACC  >  NC_000913/1788853‑1789147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.