New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 781016	53 (0.520)	3 (0.030)	3/220	NT	5.7%	intergenic (+98/‑52)	lysW/valZ	tRNA‑Lys/tRNA‑Val
	?	NC_000913	781653 =	53 (0.610)					intergenic (+1/‑432)	lysQ/nadA	tRNA‑Lys/quinolinate synthase, subunit A

ATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTCGTT  >  NC_000913/780880‑781154                                                                                                                                         |                                                                                                                                           aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTa                                                                                                                                         >  1:1471345/1‑140 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTATAACATCCAAGACAGAAGGTCAGCGTGTAGGATCACGTTGCGTCAGCAACCGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACtc                                                                                                                                         >  2:1457753/1‑139 (MQ=14)    aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATg                                                                                                                                      <  2:1345526/140‑1 (MQ=255)      ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGAc                                                                                                                                    >  1:119957/1‑140 (MQ=255)      ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGAc                                                                                                                                    >  2:705987/1‑140 (MQ=255)      ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaa                                                                                                                                    >  1:99832‑M1/1‑132 (MQ=255)               ggTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTc                                                                                                                           <  1:1355000/140‑1 (MQ=255)               ggTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTc                                                                                                                           <  1:1355028/140‑1 (MQ=255)               ggTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTc                                                                                                                           <  1:1354976/140‑1 (MQ=255)                      aTCCTGCTCGACCCCCCTGTGTTAACATCGAAGACTCATGTTAACCGTGTAGGATAACCTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGaa                                                                                                                    <  2:594367/140‑1 (MQ=18)                      aTCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGaa                                                                                                                    <  1:1438257/140‑1 (MQ=255)                      aTCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGaa                                                                                                                    <  2:1555288/140‑1 (MQ=255)                          tGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttt                                                                                                                >  1:725947‑M1/1‑112 (MQ=255)                           gCACGACCCACCAGTTTTAACATCGATGACAGATGTTATGCGTGTAGTATAACGTTGCGTAAGAAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtagt                                                                                                               <  1:774314/140‑1 (MQ=21)                           gCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGTGTCTTCCTGATAGACCCTGAACTTTTTACTGTGGGTTCGGTGGAagtttt                                                                                                               <  2:961848/140‑4 (MQ=17)                           gCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtagt                                                                                                               <  2:1137416/140‑1 (MQ=255)                           gCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtagt                                                                                                               <  1:1793080/140‑1 (MQ=255)                           gCAAGACCCACCCGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCTACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtagt                                                                                                               <  2:306013/140‑1 (MQ=255)                              cGACCCCCAAGTTTAAACATCGAAGACAGCTGTTAAGCGTGTAGGATAACGTTGCGTCCGCAACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttg                                                                                                            <  2:99832‑M1/140‑33 (MQ=255)                                 cccACCATTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgtag                                                                                                         <  1:568255/140‑1 (MQ=255)                                     ccaGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATc                                                                                                     <  1:504705/140‑1 (MQ=255)                                     ccaGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATc                                                                                                     <  1:632673/140‑1 (MQ=255)                                      caGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAAGTACGGTGGGTTCGGTGGAAGGAGTTGGTAGTATca                                                                                                    >  2:1176429/1‑139 (MQ=255)                                          tttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgcg                                                                                                <  1:1500555/140‑1 (MQ=255)                                          tttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgcg                                                                                                <  2:291794/140‑1 (MQ=255)                                          attAACATAGAAGACAGAAGTTAAGCGTGTAGGATAACGTTTCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGCTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgcg                                                                                                <  1:1275149/139‑1 (MQ=255)                                                   gAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCgg                                                                                       <  1:1296963/140‑1 (MQ=255)                                                   gAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCgg                                                                                       <  2:119957/140‑1 (MQ=255)                                                   gAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGATCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCgg                                                                                       <  2:815421/140‑1 (MQ=255)                                                        aggATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCgg                                                                                       <  2:1529672/133‑1 (MQ=255)                                                        aggATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCgg                                                                                       >  1:1529672/3‑135 (MQ=255)                                                                    gtgtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTgg                                                                      <  1:1189696/140‑1 (MQ=255)                                                                     tgtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTggg                                                                     >  1:152077/1‑140 (MQ=255)                                                                     tgtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGGAGTATCCAGCGCAGTATCGGGTGATTAGCTAAGCTggg                                                                     >  1:787120/1‑140 (MQ=255)                                                                            tAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCAc                                                              >  1:635859/1‑140 (MQ=255)                                                                            tAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCAc                                                              <  2:152077/140‑1 (MQ=255)                                                                               cGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCTCCACTAATGAAGTAGGGTACCGAGGAAGTAGTTTGAATGATCCATCGCAGGATCGGGGGTATAGCTCAGCTGGGAGAGCACCTc                                                           >  1:1908680/1‑140 (MQ=18)                                                                               cGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGTTGGGTACGGAGGCAGTAGTTTGGAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTc                                                           >  1:516806/1‑140 (MQ=37)                                                                               cGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGGGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTc                                                           >  1:1728221/1‑140 (MQ=255)                                                                                    cGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTATTTACGATGGGATCCGTGGAAGAATTTTGTAGTATACAGCCCAGTCTCGGGTGATTAGATCAGCTTGTACAGCACCACCCtaa                                                      >  1:1756708/1‑138 (MQ=18)                                                                                    cGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTa                                                      <  2:1449786/140‑1 (MQ=255)                                                                                    cGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTa                                                      <  2:1449915/140‑1 (MQ=255)                                                                                    cGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTa                                                      <  2:1471345/140‑1 (MQ=255)                                                                                      tCAGCATCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACa                                                    <  2:409924/140‑1 (MQ=255)                                                                                      tCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACa                                                    <  2:409390/140‑1 (MQ=255)                                                                                                         cgagcgaAGCGAGTCATCCTGCACGTCCCACCACTCATGACGGTGGCTTCCGTGGAAGAAGGTTGTTGTAACCACCGAAGTATCGGGTGATTAGCTCAGCGGGGGGAGCACCTCCCGGGGTAGGAGGGGGTCGGCGGGTc                                 >  2:954190/1‑140 (MQ=19)                                                                                                          gagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCg                                >  2:1305977/1‑140 (MQ=255)                                                                                                           agcgaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGa                               >  1:230566/1‑140 (MQ=255)                                                                                                            gcgaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGAt                              >  2:1203077/1‑140 (MQ=255)                                                                                                                   gagaCAACCTGCACTACCCCCCACTACTCCCCCAGCCTTCGCTGGAAGGAGTTTGAAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGACGGCGGTACGATCCCGtca                       <  2:432496/140‑1 (MQ=14)                                                                                                                      tCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTCTCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCGTACAAGGAGGGGGTCGGCGGTGCGATCCCGtcatca                    >  2:877810/1‑140 (MQ=255)                                                                                                                      tCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGtcatca                    >  2:1349850/1‑140 (MQ=255)                                                                                                                              cACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCcaccac            >  1:1762582/1‑140 (MQ=255)                                                                                                                              cACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCcaccac            >  1:316280/1‑140 (MQ=255)                                                                                                                               aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACt           >  2:1844211/1‑140 (MQ=255)                                                                                                                               aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACt           >  2:594473/1‑140 (MQ=255)                                                                                                                                   cccACCAatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagcaggtttgagttgagcgcagcgaaacaacggagccgctcgcggcgacggcccgaagggcgagcgaagc       >  2:1021259‑M1/1‑7 (MQ=255)                                                                                                                                   cccACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCggg       >  1:156711/1‑140 (MQ=255)                                                                                                                                   cccACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCAACACCCACCACTCggg       >  2:1493150/1‑140 (MQ=255)                                                                                                                                     caccacTACTGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTc     <  2:112691/140‑1 (MQ=255)                                                                                                                                     caccacTACTGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTc     <  2:112671/140‑1 (MQ=255)                                                                                                                                      accaatttaaaaaagcgccctacaggcgcttttttgctatctgctatactcaaagattctaccctgcagcaggtttgagttgagcgcagcgaaacaacggagccgatcgcggcgacggcccgaagggcgagcgaagcgag    <  1:749552‑M1/140‑137 (MQ=255)                                                                                                                                       ccaatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagctggtttgagttgagcgcagcgaaacaacggagccgctcgcggcgacggcccgaagggcgagcgaagcgagt   <  1:619889‑M1/140‑138 (MQ=255)                                                                                                                                        caatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagcaggtgtgagttgagcgcagcgaaacaacggagccgctcgcggcgacggcccgaagggcgagcgaagcgagtc  >  1:936492‑M1/1‑2 (MQ=255)                                                                                                                                        caatgtaaaaaagagccctaaaggcgcttttgtgctatctgcgatactcaatgattcgaacctgcagcagggttgagttgagcgcagcgaaactacggagccgctcgcggcgacggcccgaagggcgagcgaagcgagtc  >  1:1613677‑M1/1‑2 (MQ=255)                                                                                                                                         |                                                                                                                                           ATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTCGGGTCGTT  >  NC_000913/780880‑781154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.