New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 305090	50 (0.730)	3 (0.050)	3/268	NT	5.8%	coding (116/711 nt)	ecpE	ECP production pilus chaperone
	?	NC_000913	= 305117	49 (0.740)					coding (89/711 nt)	ecpE	ECP production pilus chaperone

GGCGGGGGGCGAAAAGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCC  >  NC_000913/304944‑305233                                                                                                                                                   |                                                                                                                                                ggCGGGGGGCGAAAAGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACGGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGAc                                                                                                                                               >  2:61586/1‑149 (MQ=255)    ggggggCGAAAAGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTAGTTGTGATTCACTACACGTTTGCTGACAAAGTCCGTCTCGGccggc                                                                                                                                            >  2:494484‑M1/1‑144 (MQ=255)       gggCGAAAAGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGc                                                                                                                                         <  2:241917/149‑1 (MQ=255)             aaaGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCTCTACACGTATGCTGACAAAGTCAGTCTCGTACGGCAGAGAAAAt                                                                                                                                   >  2:926342/1‑149 (MQ=255)                gCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTc                                                                                                                                <  1:1017795/149‑1 (MQ=255)                 cAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCa                                                                                                                               <  2:1006468/149‑1 (MQ=255)                      cACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTg                                                                                                                          >  2:408780/1‑149 (MQ=255)                        ccATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACTTTTTCTTACAAATTAAGTAGCGGACGACAACAAAAATGTCAGATTGcc                                                                                                                        >  2:1186657/1‑149 (MQ=255)                        ccATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCGCGGACGGCAGCGAAAATGTCAGATTGcc                                                                                                                        <  1:662809/149‑1 (MQ=255)                               ccGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGaa                                                                                                                 >  2:982871/1‑149 (MQ=255)                                cGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCAGTGATGGCAATTCGGTATATCGGTGCGGTTTTGTTGTTATTCACTCCACGTTTGCTGACAAAGTCAGTCTCGGgcgtcaatctgacattttcgctgccgtccgaga                                                                                                                <  2:565948‑M1/149‑34 (MQ=255)                                   gcgGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCACTACGGTATATCCGTGCGCGTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGtcggcaatctgacattttcgctgccgtccgagactg                                                                                                             <  2:1147186‑M1/148‑37 (MQ=255)                                      ggTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGtcggcaatctgacattttcgctgccgtccgagactgact                                                                                                          <  1:870475‑M1/149‑40 (MQ=255)                                        ggcgcAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGAGTGCCGACCGAAATCGCCtgt                                                                                                        <  2:583145/148‑1 (MQ=255)                                          cgcAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTgtgt                                                                                                      <  2:259205/149‑1 (MQ=255)                                             aaTTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCaa                                                                                                   >  1:472513/1‑149 (MQ=255)                                             aaTTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCaa                                                                                                   >  1:622428/1‑149 (MQ=255)                                                tCACTGCTGCCCGGGCTATCAATAGCACTGATGGAAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCTAAATCGCATGTGTCAAAgt                                                                                                >  2:642881/1‑148 (MQ=255)                                                        gcCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCa                                                                                        <  1:1186657/149‑1 (MQ=255)                                                          ccGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGc                                                                                      <  1:369079/149‑1 (MQ=255)                                                           cGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCa                                                                                     <  1:320848/149‑1 (MQ=255)                                                             ggCTATCAATAGCCCAGATGGCAATACGGTATATCCGTGCGCTTGTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATa                                                                                   <  1:672694/149‑1 (MQ=255)                                                             ggCTATCAATAGCACTGAGGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATa                                                                                   <  2:472484/149‑1 (MQ=255)                                                              gCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATAc                                                                                  >  1:47029/1‑149 (MQ=255)                                                                tATCAATAGCACTGCTGGCAATACGGTTTCTCCGTGCGCTTTTGTTGTTCTTCACTACACGGTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAg                                                                                <  2:1013416/149‑1 (MQ=255)                                                                  tCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGAc                                                                              >  1:1006398/1‑149 (MQ=255)                                                                   cAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGAcc                                                                             >  1:1003885/1‑149 (MQ=255)                                                                    attAGCACTGATGGCAATACGGTATAACCGTGCGCTATTGTTGTTATTCACTACACGTTTGCTGACACAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGAGTCAAAGGTGCCGCCAGCATACAGACCg                                                                            <  1:764082/147‑1 (MQ=255)                                                                    aaTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCg                                                                            <  1:762903/149‑1 (MQ=255)                                                                    aaTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCg                                                                            >  2:1146829/1‑149 (MQ=255)                                                                     aTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGc                                                                           >  2:351674/1‑149 (MQ=255)                                                                      tAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAACTCGCCTGTGTCAATGGTGCCGCCAGCATACAGACCGCt                                                                          >  1:684399/1‑149 (MQ=255)                                                                      tAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCt                                                                          >  1:857234/1‑149 (MQ=255)                                                                          aCTGATGGCAATACGGTATATCCGTGCGCGTTTGTTGTTCTTCACTACACGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTca                                                                      <  2:306125/149‑1 (MQ=255)                                                                             gATGGCAATACGGTATCTCCGTGCGCGTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagca                                                                   <  2:1045604/149‑1 (MQ=255)                                                                             gATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACTAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAATTCGACTGTGTCAAAGGTGCCGCCAGCATACAGCCCGCTGTcagcc                                                                   >  2:1141378/1‑148 (MQ=255)                                                                             gATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagca                                                                   <  1:27823/149‑1 (MQ=255)                                                                              aTGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagcag                                                                  <  1:982871/149‑1 (MQ=255)                                                                                   aaTACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCt                                                             <  1:641605/149‑1 (MQ=255)                                                                                       cGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGt                                                         <  1:351674/149‑1 (MQ=255)                                                                                           atatCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCTGGGCCTTAGTTAAt                                                     <  1:61586/149‑1 (MQ=255)                                                                                              tCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGtt                                                  >  1:155428/1‑149 (MQ=255)                                                                                                 gTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACg                                               >  2:292364/1‑149 (MQ=255)                                                                                                  tGCGCTTTTGTTGTTATTCACTACCCGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGc                                              <  1:775897/149‑1 (MQ=255)                                                                                                     gcTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAAACGCATGAGTCAAAGGTGCCGCCAGCAGACAGCACGATGTCAGCACTGCCTTTGTTTATGTTACGCCAc                                           >  2:1044616/1‑149 (MQ=255)                                                                                                                  ttCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGATAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCAACGTCGCCTGAACAt                              >  2:911190/1‑149 (MQ=255)                                                                                                                    cACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGa                            <  2:1006398/149‑1 (MQ=255)                                                                                                                     aCTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGaa                           >  1:1027954/1‑149 (MQ=255)                                                                                                                     aCTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGAACGAAATCGCCTGTGTCAAAGGTGCCTCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTAGCCTGAACAAGaa                           >  2:1126218/1‑149 (MQ=255)                                                                                                                      cTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCTCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAAt                          <  1:926342/149‑1 (MQ=255)                                                                                                                            gTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCAACGTCGCCTGAACATGAATCTCTcc                    <  2:622428/149‑1 (MQ=255)                                                                                                                                     cAAAGTCAGTCTCGGACGGCAGCGAAAATGTCTGATTGCCGCCCGAAATCGCCTGTGTCAACGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGACGCGCt           <  2:684399/149‑1 (MQ=255)                                                                                                                                     aaatgtcagtcTCGGAGGGCAGCGAAAATGTCAGATTGCCGACCGATATCGCCTGTGTCAAAGGGGCCGCCAGCATACAGACCGGTGTCAGCATGGCCTTAGTTAATGTTACGACACGTCGCCTGAACATGAATCTCTCCTGAAGCGCt           <  2:461315/145‑1 (MQ=255)                                                                                                                                        agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGAccgagactgactttgtcagcaaacgtgtagtgaataacaacaaaagcgcacggatataccgtattgccatcagtgctattgatagcccgggcagcagtgaattgcgcacc        <  1:870475‑M2/149‑111 (MQ=255)                                                                                                                                        agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCTCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACTTCACCTGAACATGAATCTCTACTGAATCTCTGaa        >  2:96429/1‑148 (MQ=255)                                                                                                                                        agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGACTGTGTCAAAGGTGCCGCCATCATACAGACCGCTGTCAGCATGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGCAGCGCTGAc        >  2:92633/1‑149 (MQ=255)                                                                                                                                           cagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGAccgagactgactttgtcagcaaacgtgtagtgaataacaacaaacgcgcacggatataccgtagtgccatcagtgctattgatagcccgggcagcagtgaattgcgcacccgc     <  2:1147186‑M2/149‑114 (MQ=255)                                                                                                                                              tctcGGACGGCAGCGAAAATGTCAGATTGACGCccgagactgactttgtcagcaaacgtggagtgaataacaacaaaaccgcaccgatataccgaattgccatcactgctattgatagcccgggcagcagtgaattgcgcacccgaccg  <  2:565948‑M2/149‑117 (MQ=255)                                                                                                                                                   |                                                                                                                                                GGCGGGGGGCGAAAAGCAGTTCACCATCCACCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCC  >  NC_000913/304944‑305233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.