New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 30509050 (0.730)3 (0.050) 3/268 NT 5.8% coding (116/711 nt) ecpE ECP production pilus chaperone
?NC_000913 = 305117 49 (0.740)coding (89/711 nt) ecpE ECP production pilus chaperone

CCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGTTATCATCTACCGTACGC  >  NC_000913/304974‑305261
                                                                                                                                               |                                                                                                                                                
ccGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGaa                                                                                                                                             >  2:982871/1‑149 (MQ=255)
         ggcgcAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGAGTGCCGACCGAAATCGCCtgt                                                                                                                                    <  2:583145/148‑1 (MQ=255)
           cgcAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTgtgt                                                                                                                                  <  2:259205/149‑1 (MQ=255)
              aaTTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCaa                                                                                                                               >  1:472513/1‑149 (MQ=255)
              aaTTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCaa                                                                                                                               >  1:622428/1‑149 (MQ=255)
                 tCACTGCTGCCCGGGCTATCAATAGCACTGATGGAAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCTAAATCGCATGTGTCAAAgt                                                                                                                            >  2:642881/1‑148 (MQ=255)
                         gcCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCa                                                                                                                    <  1:1186657/149‑1 (MQ=255)
                           ccGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGc                                                                                                                  <  1:369079/149‑1 (MQ=255)
                            cGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCa                                                                                                                 <  1:320848/149‑1 (MQ=255)
                              ggCTATCAATAGCCCAGATGGCAATACGGTATATCCGTGCGCTTGTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATa                                                                                                               <  1:672694/149‑1 (MQ=255)
                              ggCTATCAATAGCACTGAGGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATa                                                                                                               <  2:472484/149‑1 (MQ=255)
                               gCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATAc                                                                                                              >  1:47029/1‑149 (MQ=255)
                                 tATCAATAGCACTGCTGGCAATACGGTTTCTCCGTGCGCTTTTGTTGTTCTTCACTACACGGTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAg                                                                                                            <  2:1013416/149‑1 (MQ=255)
                                   tCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGAc                                                                                                          >  1:1006398/1‑149 (MQ=255)
                                    cAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGAcc                                                                                                         >  1:1003885/1‑149 (MQ=255)
                                     attAGCACTGATGGCAATACGGTATAACCGTGCGCTATTGTTGTTATTCACTACACGTTTGCTGACACAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGAGTCAAAGGTGCCGCCAGCATACAGACCg                                                                                                        <  1:764082/147‑1 (MQ=255)
                                     aaTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCg                                                                                                        >  2:1146829/1‑149 (MQ=255)
                                     aaTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCg                                                                                                        <  1:762903/149‑1 (MQ=255)
                                      aTAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGc                                                                                                       >  2:351674/1‑149 (MQ=255)
                                       tAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAACTCGCCTGTGTCAATGGTGCCGCCAGCATACAGACCGCt                                                                                                      >  1:684399/1‑149 (MQ=255)
                                       tAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCt                                                                                                      >  1:857234/1‑149 (MQ=255)
                                           aCTGATGGCAATACGGTATATCCGTGCGCGTTTGTTGTTCTTCACTACACGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTca                                                                                                  <  2:306125/149‑1 (MQ=255)
                                              gATGGCAATACGGTATCTCCGTGCGCGTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagca                                                                                               <  2:1045604/149‑1 (MQ=255)
                                              gATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACTAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAATTCGACTGTGTCAAAGGTGCCGCCAGCATACAGCCCGCTGTcagcc                                                                                               >  2:1141378/1‑148 (MQ=255)
                                              gATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagca                                                                                               <  1:27823/149‑1 (MQ=255)
                                               aTGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTcagcag                                                                                              <  1:982871/149‑1 (MQ=255)
                                                    aaTACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCt                                                                                         <  1:641605/149‑1 (MQ=255)
                                                        cGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGt                                                                                     <  1:351674/149‑1 (MQ=255)
                                                            atatCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCTGGGCCTTAGTTAAt                                                                                 <  1:61586/149‑1 (MQ=255)
                                                               tCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGtt                                                                              >  1:155428/1‑149 (MQ=255)
                                                                  gTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACg                                                                           >  2:292364/1‑149 (MQ=255)
                                                                   tGCGCTTTTGTTGTTATTCACTACCCGTTTGCTGACAAAGTCAGGCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGc                                                                          <  1:775897/149‑1 (MQ=255)
                                                                      gcTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAAACGCATGAGTCAAAGGTGCCGCCAGCAGACAGCACGATGTCAGCACTGCCTTTGTTTATGTTACGCCAc                                                                       >  2:1044616/1‑149 (MQ=255)
                                                                                   ttCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGATAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCAACGTCGCCTGAACAt                                                          >  2:911190/1‑149 (MQ=255)
                                                                                     cACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGa                                                        <  2:1006398/149‑1 (MQ=255)
                                                                                      aCTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGaa                                                       >  1:1027954/1‑149 (MQ=255)
                                                                                      aCTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGAACGAAATCGCCTGTGTCAAAGGTGCCTCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTAGCCTGAACAAGaa                                                       >  2:1126218/1‑149 (MQ=255)
                                                                                       cTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCTCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAAt                                                      <  1:926342/149‑1 (MQ=255)
                                                                                             gTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCAACGTCGCCTGAACATGAATCTCTcc                                                <  2:622428/149‑1 (MQ=255)
                                                                                                      cAAAGTCAGTCTCGGACGGCAGCGAAAATGTCTGATTGCCGCCCGAAATCGCCTGTGTCAACGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGACGCGCt                                       <  2:684399/149‑1 (MQ=255)
                                                                                                      aaatgtcagtcTCGGAGGGCAGCGAAAATGTCAGATTGCCGACCGATATCGCCTGTGTCAAAGGGGCCGCCAGCATACAGACCGGTGTCAGCATGGCCTTAGTTAATGTTACGACACGTCGCCTGAACATGAATCTCTCCTGAAGCGCt                                       <  2:461315/145‑1 (MQ=255)
                                                                                                         agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGAccgagactgactttgtcagcaaacgtgtagtgaataacaacaaaagcgcacggatataccgtattgccatcagtgctattgatagcccgggcagcagtgaattgcgcacc                                    <  1:870475‑M2/149‑111 (MQ=255)
                                                                                                         agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCTCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACTTCACCTGAACATGAATCTCTACTGAATCTCTGaa                                    >  2:96429/1‑148 (MQ=255)
                                                                                                         agtcagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGACTGTGTCAAAGGTGCCGCCATCATACAGACCGCTGTCAGCATGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGCAGCGCTGAc                                    >  2:92633/1‑149 (MQ=255)
                                                                                                            cagtcTCGGACGGCAGCGAAAATGTCAGATTGCCGAccgagactgactttgtcagcaaacgtgtagtgaataacaacaaacgcgcacggatataccgtagtgccatcagtgctattgatagcccgggcagcagtgaattgcgcacccgc                                 <  2:1147186‑M2/149‑114 (MQ=255)
                                                                                                               tctcGGACGGCAGCGAAAATGTCAGATTGACGCccgagactgactttgtcagcaaacgtggagtgaataacaacaaaaccgcaccgatataccgaattgccatcactgctattgatagcccgggcagcagtgaattgcgcacccgaccg                              <  2:565948‑M2/149‑117 (MQ=255)
                                                                                                                           gCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGtt                  <  2:47029/149‑1 (MQ=255)
                                                                                                                           gCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGAAAAAGGTGCAGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAAAGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGtt                  >  1:993287/1‑149 (MQ=255)
                                                                                                                             gAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGTTat                >  1:1053292/1‑149 (MQ=255)
                                                                                                                              ttaaTGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTATTGTTACGCCACGTCGCCTGAACATGATTCTCTCCTGATGCGCTGACTTCGCCAAACCAGCCGTTatc               <  2:440998/147‑1 (MQ=255)
                                                                                                                                   gTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGGCAGCAGGGCCTTAGTTACTGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGTTATCATCTa          <  1:642881/149‑1 (MQ=255)
                                                                                                                                      aGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCCCGTCGCCTGAACATGATTCTCTCCTGATGCGCTGACTTCGCCAAACGCGCCGTGATCATCtccag       >  1:875774/1‑145 (MQ=255)
                                                                                                                                       gATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCACTCCTGAAGCGCTGACTTCTCCAAACCAGCCGTTATCATCTACCGt      >  2:399101/1‑149 (MQ=255)
                                                                                                                                        atagCCGACCGAAATCGACTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCAGTAGTAAATGTTACGCCACGTAGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAACCCAGCCGTTATCCTCTACCGTa     >  1:988598/4‑149 (MQ=255)
                                                                                                                                           gccggccgagacggactttgtcagcaaacgtgtagtgaatcacaactaaagcgcacggatataccgtattgccatcagtgctattgatagcccgggcagcagtgaattgcgcacccgaccggtggatggtgaactgcttttcgcccccc  >  2:494484‑M2/1‑5 (MQ=255)
                                                                                                                                               |                                                                                                                                                
CCGGTCGGGTGCGCAATTCACTGCTGCCCGGGCTATCAATAGCACTGATGGCAATACGGTATATCCGTGCGCTTTTGTTGTTATTCACTACACGTTTGCTGACAAAGTCAGTCTCGGACGGCAGCGAAAATGTCAGATTGCCGACCGAAATCGCCTGTGTCAAAGGTGCCGCCAGCATACAGACCGCTGTCAGCAGGGCCTTAGTTAATGTTACGCCACGTCGCCTGAACATGAATCTCTCCTGAAGCGCTGACTTCGCCAAACCAGCCGTTATCATCTACCGTACGC  >  NC_000913/304974‑305261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.