New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1387868	44 (0.640)	4 (0.060)	4/270	NT	8.4%	coding (1149/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	NC_000913	= 1387892	44 (0.660)					coding (1173/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

GGGTGATTTGCGCTACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGT  >  NC_000913/1387720‑1388015                                                                                                                                                     |                                                                                                                                                    gggTGATTTGCGCTACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTG                                                                                                                                                     >  2:942386‑M1/1‑149 (MQ=255)   gTGATTTGCGCTACACAGAAGAATCTGGGCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGtt                                                                                                                                                   <  1:362028/149‑1 (MQ=255)      aTTTGCGCTACGCAGAAGAATCTGGTCGATCTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTtcgt                                                                                                                                                >  1:860924/1‑149 (MQ=255)       tttGCGCTACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGCGCTGTtcgtc                                                                                                                                               >  1:358037/1‑149 (MQ=255)           cgcTACGCAGAAGAATCTTGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGccc                                                                                                                                           <  1:385913/149‑1 (MQ=255)             cTACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACGGAGCTGTTCGTCGCCCGc                                                                                                                                         >  1:381214/1‑149 (MQ=255)              tACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCt                                                                                                                                        <  1:1076474/149‑1 (MQ=255)              tACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGAGCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGTAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCt                                                                                                                                        <  1:905518/149‑1 (MQ=255)                 tcAGAAGAATCTGGTAGAACTGTTGCAAAAAGGCAGGTTCCGTGAAGATCTCTATTATCGTCTTAACGTGTTGACTCTCAATCTCCCGCCGCTACGTGACTGGCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTg                                                                                                                                     <  1:640030/148‑1 (MQ=255)                 gCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGGGAAGAGCTCTATTATCGTCTGAACGGGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGAGATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTg                                                                                                                                     <  1:642626/149‑1 (MQ=255)                  cAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGc                                                                                                                                    >  2:569574/1‑149 (MQ=255)                      cgaatCTGGGCGAACTCGGGCAAAACGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTAGACGCTCAATCTGCCGCCGCTACGTGACTGGCCGCAGGACATCATGCCGTTAACTGAGCTGatcggcggcaaagcgggcgac                                                                                                                                <  1:336503‑M1/148‑22 (MQ=255)                      agaaTCTGGTCGAACTCGTGCCAAAAGCCATGTCCCTGTAAGATCTCTATTATCGGCTGAACTTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCcgac                                                                                                                                <  2:835643/149‑1 (MQ=255)                         aTCTGGTCGAACTGGTGCAAAAAGGCCTGTTCCGTGAAGATCTCTATTTTGGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAg                                                                                                                             <  2:143207/149‑1 (MQ=255)                           cTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGctcgtcggcaaagcgggcgacgaaca                                                                                                                           <  1:323500‑M1/149‑27 (MQ=255)                                     tGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCcg                                                                                                                 >  1:569496/1‑149 (MQ=255)                                       gTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGCCGAGCAGGGCGTGCcgcg                                                                                                               >  1:788295/1‑149 (MQ=255)                                          cAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTcc                                                                                                            <  2:170372/149‑1 (MQ=255)                                           aaaaaGGCATGTTCCGTGAAGATCTCTATTATCGAATGAACGTGTTGACGCTCAATCTGCCTCCGCGACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTGGCCGCCGCGCAGGGCGTGCCGCGTCCg                                                                                                           >  2:809589/1‑149 (MQ=255)                                            aaaaGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTTCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCAGCTTTGCCGACGAGCAGGGCGTGCCGCGTccta                                                                                                          >  1:448885/1‑147 (MQ=255)                                            aaaaGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGa                                                                                                          >  2:766675/1‑149 (MQ=255)                                                 gCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGCGCTGTTCGTCGCCCGCTTTGCCGCCCAGCAGGGCGTGCCGCGTCCGAAACTg                                                                                                     >  1:568783/1‑149 (MQ=255)                                                 gCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTCCCGCCGCGACCAGACTGTCCGCAGGACAAGCAGCCGTTACCAGAGCTGATAGTCGCCAGCTTGGCCGCCGCCCATGGCTAGCCCCGTCCgtacaag                                                                                                     >  2:1100574/1‑143 (MQ=255)                                                         cGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGa                                                                                             <  1:990976/149‑1 (MQ=255)                                                         cGTGAAGATCTCTATAATCGTCTGAACGTGTTGACGATCAATCTGCCGCCCCTACGTGACTCTCACCAGAACAACATGCCGTTAAAAAAGCTGATCGTCGCCCCCTGTGCCGACGAGCCGGGCGTGCCGCGGCCGAACCTGGCCCCTGa                                                                                             >  2:780264/1‑149 (MQ=255)                                                            gAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCt                                                                                          <  1:313180/149‑1 (MQ=255)                                                                 tctcTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATa                                                                                     <  2:323468/149‑1 (MQ=255)                                                                  ctctATTATCGTCTGACCGTGGTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTTAATAc                                                                                    <  1:91447/149‑1 (MQ=255)                                                                    ctATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATTCTg                                                                                  >  1:925553/1‑149 (MQ=255)                                                                                gAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGCCCTGAATACTGTACTTACGCGtt                                                                      >  2:434693/1‑149 (MQ=255)                                                                                 aaCGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTa                                                                     >  2:534663/1‑149 (MQ=255)                                                                                 aaCGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTa                                                                     >  2:695821/1‑149 (MQ=255)                                                                                     tgtTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCg                                                                 >  1:1180121/1‑149 (MQ=255)                                                                                           cGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCg                                                           <  1:766675/149‑1 (MQ=255)                                                                                                 aTCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGctcgtcggcaaagcgggcgacgaacagctc                                                                                                                       <  2:628249‑M1/83‑31 (MQ=255)                                                                                                 aTCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGctcgtcggcaaagcgggcgacgaacagctc                                                                                                                       >  1:628249‑M1/1‑53 (MQ=255)                                                                                                  tCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTATGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAAGACTGTACTTACGCGTTATGCGTGGCCGGGAAAtg                                                    >  2:993073/1‑149 (MQ=255)                                                                                                     gccgccGCTACGTGACTGTCCGAAGGCCATCATGCCGATACCTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGAGCCGCGTCCGAATCTGGCCGCTCTCCTGAATACTGTACTTACGCGTTATGCGTGGCCCGGAAATGTGc                                                 >  2:877927/1‑149 (MQ=255)                                                                                                        gccgcTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGGCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGc                                              <  1:1006712/149‑1 (MQ=255)                                                                                                                  gACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGaa                                    >  1:829157/1‑149 (MQ=255)                                                                                                                  gACTGTCCGCAGGACATCATGCAGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGaa                                    >  1:553806/1‑149 (MQ=255)                                                                                                                     tGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGGCCTGAATACTGTACTTACGCGTTATGCGTGGCCGGCAAATGAGCGGCAGTTAAAGAACGc                                 >  2:595575/1‑149 (MQ=255)                                                                                                                      ggccGCAGGACATCATGCCGTTACCTGAGCTGTTCGTCGCCCGCTGTGCCGACGAGCAGGGCGTGCCGCGTCCGACACTGGCCGCTGACCTGAATCCTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGct                                <  1:701966/147‑1 (MQ=255)                                                                                                                       tCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGcta                               >  1:490177/1‑149 (MQ=255)                                                                                                                            aGGACATCATGCCGTTATCTGAGCTGTTCGGCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGGTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGctatctat                          <  1:906020/149‑1 (MQ=255)                                                                                                                              gACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAAGACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGTGGCAGTTAAAGAACGCTATCTATcg                        >  2:1013718/1‑149 (MQ=255)                                                                                                                                   catGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCAc                   <  1:569574/149‑1 (MQ=255)                                                                                                                                         gTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGacac             <  2:591437/149‑1 (MQ=255)                                                                                                                                         gTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGAGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGacac             >  2:1098072/1‑149 (MQ=255)                                                                                                                                           tAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGGGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACaa           <  1:942386/149‑1 (MQ=255)                                                                                                                                               tGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCACGGCGTGCCGCGTCCGAAACAGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGCAAATGTGCGGCAGTAAAAGAACGCTATCTATAGCGCACTGACACAACTgg       >  2:665310/1‑149 (MQ=255)                                                                                                                                                gAGCTGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagat                                                                        <  2:628249‑M2/83‑54 (MQ=255)                                                                                                                                                gAGCTGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagat                                                                        >  1:628249‑M2/1‑30 (MQ=255)                                                                                                                                                 aGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGAc     <  1:534663/149‑1 (MQ=255)                                                                                                                                                   cTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACGGGACgg   >  1:833075/1‑149 (MQ=255)                                                                                                                                                   cTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCATTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACgg   >  1:1106213/1‑149 (MQ=255)                                                                                                                                                    tGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagattgagcgtcaacacgttcagacgataatagagatcttcacggaacatgcctttttgcaccagttcgaccag  <  1:323500‑M2/149‑124 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGGTGATTTGCGCTACGCAGAAGAATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGT  >  NC_000913/1387720‑1388015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.