New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1387868	44 (0.640)	4 (0.060)	4/270	NT	8.4%	coding (1149/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	NC_000913	= 1387892	44 (0.660)					coding (1173/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase

ATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATT  >  NC_000913/1387744‑1388039                                                                                                                                                     |                                                                                                                                                    aTCTGGTCGAACTGGTGCAAAAAGGCCTGTTCCGTGAAGATCTCTATTTTGGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAg                                                                                                                                                     <  2:143207/149‑1 (MQ=255)             tGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCcg                                                                                                                                         >  1:569496/1‑149 (MQ=255)               gTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGCCGAGCAGGGCGTGCcgcg                                                                                                                                       >  1:788295/1‑149 (MQ=255)                  cAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTcc                                                                                                                                    <  2:170372/149‑1 (MQ=255)                   aaaaaGGCATGTTCCGTGAAGATCTCTATTATCGAATGAACGTGTTGACGCTCAATCTGCCTCCGCGACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTGGCCGCCGCGCAGGGCGTGCCGCGTCCg                                                                                                                                   >  2:809589/1‑149 (MQ=255)                    aaaaGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTTCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCAGCTTTGCCGACGAGCAGGGCGTGCCGCGTccta                                                                                                                                  >  1:448885/1‑147 (MQ=255)                    aaaaGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGa                                                                                                                                  >  2:766675/1‑149 (MQ=255)                         gCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGCGCTGTTCGTCGCCCGCTTTGCCGCCCAGCAGGGCGTGCCGCGTCCGAAACTg                                                                                                                             >  1:568783/1‑149 (MQ=255)                         gCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTCCCGCCGCGACCAGACTGTCCGCAGGACAAGCAGCCGTTACCAGAGCTGATAGTCGCCAGCTTGGCCGCCGCCCATGGCTAGCCCCGTCCgtacaag                                                                                                                             >  2:1100574/1‑143 (MQ=255)                                 cGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGa                                                                                                                     <  1:990976/149‑1 (MQ=255)                                 cGTGAAGATCTCTATAATCGTCTGAACGTGTTGACGATCAATCTGCCGCCCCTACGTGACTCTCACCAGAACAACATGCCGTTAAAAAAGCTGATCGTCGCCCCCTGTGCCGACGAGCCGGGCGTGCCGCGGCCGAACCTGGCCCCTGa                                                                                                                     >  2:780264/1‑149 (MQ=255)                                    gAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCt                                                                                                                  <  1:313180/149‑1 (MQ=255)                                         tctcTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATa                                                                                                             <  2:323468/149‑1 (MQ=255)                                          ctctATTATCGTCTGACCGTGGTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTTAATAc                                                                                                            <  1:91447/149‑1 (MQ=255)                                            ctATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATTCTg                                                                                                          >  1:925553/1‑149 (MQ=255)                                                        gAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGCCCTGAATACTGTACTTACGCGtt                                                                                              >  2:434693/1‑149 (MQ=255)                                                         aaCGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTa                                                                                             >  2:695821/1‑149 (MQ=255)                                                         aaCGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTa                                                                                             >  2:534663/1‑149 (MQ=255)                                                             tgtTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCg                                                                                         >  1:1180121/1‑149 (MQ=255)                                                                   cGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCg                                                                                   <  1:766675/149‑1 (MQ=255)                                                                          tCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTATGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAAGACTGTACTTACGCGTTATGCGTGGCCGGGAAAtg                                                                            >  2:993073/1‑149 (MQ=255)                                                                             gccgccGCTACGTGACTGTCCGAAGGCCATCATGCCGATACCTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGAGCCGCGTCCGAATCTGGCCGCTCTCCTGAATACTGTACTTACGCGTTATGCGTGGCCCGGAAATGTGc                                                                         >  2:877927/1‑149 (MQ=255)                                                                                gccgcTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGGCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGc                                                                      <  1:1006712/149‑1 (MQ=255)                                                                                          gACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGaa                                                            >  1:829157/1‑149 (MQ=255)                                                                                          gACTGTCCGCAGGACATCATGCAGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGaa                                                            >  1:553806/1‑149 (MQ=255)                                                                                             tGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGGCCTGAATACTGTACTTACGCGTTATGCGTGGCCGGCAAATGAGCGGCAGTTAAAGAACGc                                                         >  2:595575/1‑149 (MQ=255)                                                                                              ggccGCAGGACATCATGCCGTTACCTGAGCTGTTCGTCGCCCGCTGTGCCGACGAGCAGGGCGTGCCGCGTCCGACACTGGCCGCTGACCTGAATCCTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGct                                                        <  1:701966/147‑1 (MQ=255)                                                                                               tCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGcta                                                       >  1:490177/1‑149 (MQ=255)                                                                                                    aGGACATCATGCCGTTATCTGAGCTGTTCGGCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGGTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGctatctat                                                  <  1:906020/149‑1 (MQ=255)                                                                                                      gACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAAGACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGTGGCAGTTAAAGAACGCTATCTATcg                                                >  2:1013718/1‑149 (MQ=255)                                                                                                           catGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCAc                                           <  1:569574/149‑1 (MQ=255)                                                                                                                 gTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGacac                                     <  2:591437/149‑1 (MQ=255)                                                                                                                 gTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGAGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGacac                                     >  2:1098072/1‑149 (MQ=255)                                                                                                                   tAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGGGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACaa                                   <  1:942386/149‑1 (MQ=255)                                                                                                                       tGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCACGGCGTGCCGCGTCCGAAACAGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGCAAATGTGCGGCAGTAAAAGAACGCTATCTATAGCGCACTGACACAACTgg                               >  2:665310/1‑149 (MQ=255)                                                                                                                        gAGCTGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagat                                                                                                <  2:628249‑M2/83‑54 (MQ=255)                                                                                                                        gAGCTGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagat                                                                                                >  1:628249‑M2/1‑30 (MQ=255)                                                                                                                         aGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGAc                             <  1:534663/149‑1 (MQ=255)                                                                                                                           cTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACGGGACgg                           >  1:833075/1‑149 (MQ=255)                                                                                                                           cTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCATTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACgg                           >  1:1106213/1‑149 (MQ=255)                                                                                                                            tGTTCGTCGCCCGCTTTGCCGACGAGcagctcagttaacggcatgatgtcctgcggacagtcacgtagcggcggcagattgagcgtcaacacgttcagacgataatagagatcttcacggaacatgcctttttgcaccagttcgaccag                          <  1:323500‑M2/149‑124 (MQ=255)                                                                                                                               tcgtcgCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTAt                       <  2:1180121/149‑1 (MQ=255)                                                                                                                                 gtcgCCCGCTTTGCCGCCGATcagctcagttaacggcatgatgtcctgcggccagtcacgtagcggcggcagattgagcgtctacacgttcagacgataatagagatcttcacggaacatgccgttttgcccgagttcgcccagattcg                     <  1:336503‑M2/149‑129 (MQ=255)                                                                                                                                    gCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGTCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGTAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCt                  <  2:721984/149‑1 (MQ=255)                                                                                                                                     cccGCTTAGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTCTGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTg                 <  2:358037/149‑1 (MQ=255)                                                                                                                                        gCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGt              >  2:598652/1‑149 (MQ=255)                                                                                                                                         cTTTGCCGACGAGCAGGGCGTGCCGCGGCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTc             <  2:569496/149‑1 (MQ=255)                                                                                                                                         atttACCGACGAGCAGGGCGTGCCGCGTCCGCAACTGGACCCTGACCTGACTACTGTACTTACGCGTTATGCGTGGCCGGGAAATGAGCGGCAGTTAAATAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTc             <  1:73082/148‑1 (MQ=255)                                                                                                                                             gCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCcaca         <  2:860924/149‑1 (MQ=255)                                                                                                                                                    aGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGATATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATAtt  <  2:448885/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATCTGGTCGAACTGGTGCAAAAAGGCATGTTCCGTGAAGATCTCTATTATCGTCTGAACGTGTTGACGCTCAATCTGCCGCCGCTACGTGACTGTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATT  >  NC_000913/1387744‑1388039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.