mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 81 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4583137 | 330 (0.840) | 6 (0.020) | 3/266 | NT | 1.7% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 384 (1.030) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 288 (0.740) | 10 (0.030) | 6/260 | NT | 3.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 316 (0.860) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4523068 | 461 (1.180) | 5 (0.010) | 3/260 | NT | 1.1% | coding (1027/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | = 4523128 | 452 (1.240) | coding (967/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 4509412 = | 495 (1.270) | 4 (0.010) | 3/260 | NT | 0.89% | noncoding (406/795 nt) | IS911 | repeat region |
| ? | NC_000913 | 4509461 = | 427 (1.170) | noncoding (455/795 nt) | IS911 | repeat region | |||||
| * | ? | NC_000913 | = 4323389 | 558 (1.430) | 3 (0.010) | 3/262 | NT | 0.55% | coding (964/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 4323407 | 563 (1.530) | coding (946/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 4200155 | 377 (0.960) | 3 (0.010) | 3/256 | NT | 0.82% | intergenic (+61/‑126) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | = 4200170 | 376 (1.040) | intergenic (+76/‑111) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| * | ? | NC_000913 | 4139476 = | 373 (0.950) | 5 (0.010) | 4/272 | NT | 1.4% | coding (233/663 nt) | fsaB | fructose‑6‑phosphate aldolase 2 |
| ? | NC_000913 | 4139522 = | 347 (0.910) | coding (187/663 nt) | fsaB | fructose‑6‑phosphate aldolase 2 | |||||
| * | ? | NC_000913 | 4131727 = | 475 (1.210) | 6 (0.020) | 3/260 | NT | 1.4% | coding (1893/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| ? | NC_000913 | 4131773 = | 407 (1.110) | coding (1939/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 | |||||
| * | ? | NC_000913 | = 4098442 | 407 (1.040) | 5 (0.010) | 3/260 | NT | 1.2% | coding (707/837 nt) | rhaS | transcriptional activator of rhaBAD and rhaT |
| ? | NC_000913 | = 4098466 | 411 (1.120) | coding (731/837 nt) | rhaS | transcriptional activator of rhaBAD and rhaT | |||||
| * | ? | NC_000913 | = 4094350 | 436 (1.120) | 4 (0.010) | 4/196 | NT | 1.2% | noncoding (35/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094719 = | 345 (1.260) | intergenic (‑447/+4) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||