| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 630079 | 41 (0.690) | 4 (0.070) | 4/262 | NT | 9.9% | coding (186/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| ? | NC_000913 | = 630098 | 34 (0.600) | coding (205/2106 nt) | cstA | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein | |||||
CTGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGG > NC_000913/629934‑630227 | ctGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGCTTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGtt < 1:233695/149‑1 (MQ=255) tAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGAc < 1:295294/149‑1 (MQ=255) tAATGGGAGCATTTGCGCTGGGCGACATTGCTTTACAGCGTGGGGAACCGAGCAACGCGCGGTGGAGTGTGGGGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGAc < 1:735473/149‑1 (MQ=255) gactGGGAGCATTTGCTCGGGGATACATTGCTTAAACTCGGGGCGAACAGAGCCACGCGCTGTGGAGTGTGGTGGCGTCGGTCTGTATCTAGCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGAc < 1:739047/146‑1 (MQ=255) aTGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGGCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGAccc < 1:33035/149‑1 (MQ=255) tGGGAGCATTTGCTCTGGGATACATTGCTTTAACTCGAGGGGAACAGATCAACGCGCTGTGGATTTTGGTGGCGTCGGTCTGTTTCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCg < 1:771646/149‑1 (MQ=255) gAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCTTTTTTATGGGCTGAATATCGCCAAAAATCTGCTGGCCGTTGACCCGAcc > 2:244221/1‑148 (MQ=255) gAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGAcg > 1:652868/1‑149 (MQ=255) aGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGAcgc > 2:508678/1‑149 (MQ=255) gCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGCAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATAAGATCGCTTACCGTTTTTATGGGCAGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGAcgcg > 2:594076/1‑149 (MQ=255) tttGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCTGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTTCTGGCGGTTGACCCGACGCGTAt > 1:185471/1‑149 (MQ=255) gCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAc > 1:135487‑M2/1‑148 (MQ=255) gCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAc > 2:411779‑M2/1‑148 (MQ=255) ctctGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcg < 2:103138‑M2/149‑3 (MQ=255) gATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCg < 1:948367/149‑1 (MQ=255) cATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGtcatacgcgtcgggtcaaccgccagcacatt > 2:871141‑M1/1‑118 (MQ=255) aTTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTCACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGtcatacgcgtcgggtcaaccgccagcacattt < 2:996219‑M1/149‑33 (MQ=255) tGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGtcatacgcgtcgggtcaaccgccagcacattttt < 1:871141‑M1/149‑35 (MQ=255) cTTTAAATCGTGGCGCACAGATCAACGCGCTGTGGATTGTGGTCGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGtcatacgcggcgggtcaaccgccagcacatttttgg < 1:795901‑M1/149‑37 (MQ=255) tCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAacgacg < 1:891974/149‑1 (MQ=255) ggAACAGAACAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCAAAAAATGTGCTGGAGGTTGCCCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGTCTgg > 2:456705/1‑149 (MQ=255) gaccAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGa < 1:449925/146‑1 (MQ=255) tccaCGCGCGGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGAGCGCTTACCGTTTTTATGGGCTGTATCTCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTAtgtg < 1:476105/146‑1 (MQ=255) tCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTAtgtg < 2:80422/149‑1 (MQ=255) ttGTGGTCGCGGCGGGCGGTATCTCGCGGCTCGCCTACCGATTTTATGGGCTGCACAGCCCCAAAAATGAGCTGGCGGGGGACCCGAAGCGGATGACGCCAGCGGTGCGCCATAACGCCGGGCGGGACTATGTGCCGACGGACAAGaaa < 2:676025/149‑1 (MQ=255) gtggCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCt > 1:344199/1‑149 (MQ=255) gTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAAAGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg > 1:566725/1‑149 (MQ=255) gTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTAAGGGCTGTATTTCGCCAAAAATGTGCTGGCGGTAGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGTACTATGTGCCGACGGACAATAAAGTGCTGTTCg > 2:429495/1‑149 (MQ=255) ggTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTc < 2:652868/149‑1 (MQ=255) cTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGGCATACCGACGGGCTGGACTATGAGCCGCCGGACAAGAAAGTGCTGTTCGGTCAcc > 2:674404/1‑149 (MQ=255) cTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAcc > 1:722633/1‑149 (MQ=255) gTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGATGGCGGTTGACCAGACGCGTATCACCCCAGCGCTGCGCCATAACGACGGGCTGCACTAAGTGCCGACGGACAAGCAAGTGCTTTTCCGTCACCAt > 1:74984/1‑149 (MQ=255) tctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtttt > 2:123547/1‑149 (MQ=255) ctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTg > 2:550403/1‑149 (MQ=255) atctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGCGCTGGACTATGAGACGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCg > 2:13199/1‑149 (MQ=255) cGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTg < 2:288374/149‑1 (MQ=255) cTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACACGACGCGTATGACGCCAGCGGTGCGCCATACCGACGGGCTGGCCTATGTGCCGACGGACAAGAAAGTGGTGGTCGGTCACCATTTTGCGGCCTTTGcc > 2:298656/1‑149 (MQ=255) aCCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGa > 2:150053/1‑149 (MQ=255) cGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGc < 2:63077/149‑1 (MQ=255) cGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGc < 1:103138/149‑1 (MQ=255) ttATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTc < 1:90239/149‑1 (MQ=255) aTGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCg > 1:440813/1‑149 (MQ=255) tGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGc < 2:717794/149‑1 (MQ=255) gCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGt > 2:829676/1‑149 (MQ=255) ccAAAAATGTGCTGGCGGTTGACCCGCCGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgcgaccacaatccacagcgcgttgatctgtgcgccacgatttaaag < 1:795901‑M2/149‑114 (MQ=255) ccAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTa < 2:344199/149‑1 (MQ=255) cAAAAATGTGCTGGCGGTTGACCCGACGCTTATCACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCCCCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGCTAc > 1:80191/1‑149 (MQ=255) aaaaaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagca < 1:871141‑M2/149‑116 (MQ=255) aaaaaTGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACt > 2:728089/1‑149 (MQ=255) aaaaaTGTGCTGGCGGTTGACCCGACGCGTAGGACGCCAGCGGGGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACt < 2:346048/149‑1 (MQ=255) aaaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtgagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaat < 2:996219‑M2/149‑118 (MQ=255) aaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatg > 2:871141‑M2/1‑31 (MQ=255) gCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGGGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTTCGGGCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGgcgc < 1:508678/149‑1 (MQ=255) ggCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCaaa > 1:659287/1‑149 (MQ=255) cGtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagag < 2:103138‑M1/149‑148 (MQ=255) gtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagagc > 2:411779‑M1/1‑1 (MQ=255) gtcatacgcgtcgggtcaaccgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatgtatcccagagc > 1:135487‑M1/1‑1 (MQ=255) | CTGTAATGGGAGCATTTGCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGG > NC_000913/629934‑630227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |