New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 630079	41 (0.690)	4 (0.070)	4/262	NT	9.9%	coding (186/2106 nt)	cstA	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein
	?	NC_000913	= 630098	34 (0.600)					coding (205/2106 nt)	cstA	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein

GCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGCTACCTGCCGGGGAT  >  NC_000913/629951‑630243                                                                                                                                                    |                                                                                                                                                  gCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAc                                                                                                                                                  >  1:135487‑M2/1‑148 (MQ=255) gCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAc                                                                                                                                                  >  2:411779‑M2/1‑148 (MQ=255)  ctctGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGAcg                                                                                                                                                 <  2:103138‑M2/149‑3 (MQ=255)        gATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCg                                                                                                                                           <  1:948367/149‑1 (MQ=255)                        tCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAacgacg                                                                                                                           <  1:891974/149‑1 (MQ=255)                              ggAACAGAACAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCAAAAAATGTGCTGGAGGTTGCCCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGTCTgg                                                                                                                     >  2:456705/1‑149 (MQ=255)                               gaccAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGa                                                                                                                    <  1:449925/146‑1 (MQ=255)                                      tccaCGCGCGGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGAGCGCTTACCGTTTTTATGGGCTGTATCTCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTAtgtg                                                                                                             <  1:476105/146‑1 (MQ=255)                                      tCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTAtgtg                                                                                                             <  2:80422/149‑1 (MQ=255)                                                     ttGTGGTCGCGGCGGGCGGTATCTCGCGGCTCGCCTACCGATTTTATGGGCTGCACAGCCCCAAAAATGAGCTGGCGGGGGACCCGAAGCGGATGACGCCAGCGGTGCGCCATAACGCCGGGCGGGACTATGTGCCGACGGACAAGaaa                                                                                              <  2:676025/149‑1 (MQ=255)                                                          gtggCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCt                                                                                         >  1:344199/1‑149 (MQ=255)                                                               gTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAAAGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCg                                                                                    >  1:566725/1‑149 (MQ=255)                                                               gTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTAAGGGCTGTATTTCGCCAAAAATGTGCTGGCGGTAGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGTACTATGTGCCGACGGACAATAAAGTGCTGTTCg                                                                                    >  2:429495/1‑149 (MQ=255)                                                                  ggTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTc                                                                                 <  2:652868/149‑1 (MQ=255)                                                                     cTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGGCATACCGACGGGCTGGACTATGAGCCGCCGGACAAGAAAGTGCTGTTCGGTCAcc                                                                              >  2:674404/1‑149 (MQ=255)                                                                     cTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCAcc                                                                              >  1:722633/1‑149 (MQ=255)                                                                       gTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGATGGCGGTTGACCAGACGCGTATCACCCCAGCGCTGCGCCATAACGACGGGCTGCACTAAGTGCCGACGGACAAGCAAGTGCTTTTCCGTCACCAt                                                                            >  1:74984/1‑149 (MQ=255)                                                                          tctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCAtttt                                                                         >  2:123547/1‑149 (MQ=255)                                                                           ctatctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTg                                                                        >  2:550403/1‑149 (MQ=255)                                                                             atctGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGCGCTGGACTATGAGACGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCg                                                                      >  2:13199/1‑149 (MQ=255)                                                                                    cGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTg                                                               <  2:288374/149‑1 (MQ=255)                                                                                      cTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACACGACGCGTATGACGCCAGCGGTGCGCCATACCGACGGGCTGGCCTATGTGCCGACGGACAAGAAAGTGGTGGTCGGTCACCATTTTGCGGCCTTTGcc                                                             >  2:298656/1‑149 (MQ=255)                                                                                         aCCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGa                                                          >  2:150053/1‑149 (MQ=255)                                                                                           cGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGc                                                        <  1:103138/149‑1 (MQ=255)                                                                                           cGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGc                                                        <  2:63077/149‑1 (MQ=255)                                                                                                ttATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTc                                                   <  1:90239/149‑1 (MQ=255)                                                                                                  aTGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCg                                                 >  1:440813/1‑149 (MQ=255)                                                                                                   tGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGc                                                <  2:717794/149‑1 (MQ=255)                                                                                                                gCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGt                                   >  2:829676/1‑149 (MQ=255)                                                                                                                 ccAAAAATGTGCTGGCGGTTGACCCGCCGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgcgaccacaatccacagcgcgttgatctgtgcgccacgatttaaag                                  <  1:795901‑M2/149‑114 (MQ=255)                                                                                                                 ccAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTa                                  <  2:344199/149‑1 (MQ=255)                                                                                                                  cAAAAATGTGCTGGCGGTTGACCCGACGCTTATCACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCCCCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGCTAc                                 >  1:80191/1‑149 (MQ=255)                                                                                                                   aaaaaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagca                                <  1:871141‑M2/149‑116 (MQ=255)                                                                                                                   aaaaaTGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACt                                >  2:728089/1‑149 (MQ=255)                                                                                                                   aaaaaTGTGCTGGCGGTTGACCCGACGCGTAGGACGCCAGCGGGGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACt                                <  2:346048/149‑1 (MQ=255)                                                                                                                     aaaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtgagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaat                              <  2:996219‑M2/149‑118 (MQ=255)                                                                                                                      aaTGTGCTGGCGGTTGACCCGACGCGTATGAcgccagcacatttttggcgatatacagcccataaaaacggtaagcgatcagatagatacagaccgacgccaccacaatccacagcgcgttgatctgttccccacgatttaaagcaatg                             >  2:871141‑M2/1‑31 (MQ=255)                                                                                                                           gCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGGGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGGGCTGTTCGGGCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGgcgc                        <  1:508678/149‑1 (MQ=255)                                                                                                                              ggCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCaaa                     >  1:659287/1‑149 (MQ=255)                                                                                                                               gcgggggACCCGACGCGTAGGACGCCAGCGGGGCGCCATCACGACGGGCTGGACTATGGGCCGCCGGACAAGAACGTGCGGTTCGGTCACCATATTGCGGCCAATGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAAt                    <  1:98462/143‑1 (MQ=255)                                                                                                                                          gccgcgTAGGACCCCAGCGGTGCGCCAGAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTGCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGCTACCTGc         <  1:989111/147‑1 (MQ=255)                                                                                                                                          gACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGAATAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGCTCCCTGc         >  1:632845/1‑149 (MQ=255)                                                                                                                                                 aTGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATTTGCCGACGGACAAGACAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCGGGAGCTGGTCCGGTGGTGGGGCCGGTCCTGGCGGGGCAAATGGGCTCCCGGCCGGGgat  >  2:898356/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCTCTGGGATACATTGCTTTAAATCGTGGGGAACAGATCAACGCGCTGTGGATTGTGGTGGCGTCGGTCTGTATCTATCTGATCGCTTACCGTTTTTATGGGCTGTATATCGCCAAAAATGTGCTGGCGGTTGACCCGACGCGTATGACGCCAGCGGTGCGCCATAACGACGGGCTGGACTATGTGCCGACGGACAAGAAAGTGCTGTTCGGTCACCATTTTGCGGCCATTGCCGGAGCAGGTCCGCTGGTGGGGCCGGTACTGGCGGCGCAAATGGGCTACCTGCCGGGGAT  >  NC_000913/629951‑630243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.