mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 102 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633104 | 606 (1.190) | 7 (0.010) | 5/264 | NT | 1.2% | noncoding (14/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633154 | 622 (1.280) | noncoding (64/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4583130 | 425 (0.830) | 8 (0.020) | 7/270 | NT | 1.8% | intergenic (‑82/+119) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583231 | 463 (0.930) | intergenic (‑183/+18) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4579883 | 383 (0.750) | 4 (0.010) | 4/266 | NT | 1.0% | noncoding (49/77 nt) | symR | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA |
| ? | NC_000913 | = 4579899 | 389 (0.790) | noncoding (65/77 nt) | symR | sRNA antisense regulator destabilizing divergent and overlapping symE mRNA | |||||
| * | ? | NC_000913 | 4557353 = | 575 (1.130) | 7 (0.010) | 3/266 | NT | 1.3% | coding (361/393 nt) | iraD | RpoS stabilzer after DNA damage, anti‑RssB factor |
| ? | NC_000913 | 4557417 = | 510 (1.040) | coding (873/912 nt) | hypT | hypochlorite‑responsive transcription factor | |||||
| * | ? | NC_000913 | 4542682 = | 398 (0.780) | 10 (0.020) | 10/258 | NT | 2.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 438 (0.920) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4377342 = | 586 (1.150) | 3 (0.010) | 3/260 | NT | 0.56% | coding (381/534 nt) | blc | outer membrane lipoprotein cell division and growth lipocalin |
| ? | NC_000913 | 4377386 = | 506 (1.050) | coding (337/534 nt) | blc | outer membrane lipoprotein cell division and growth lipocalin | |||||
| * | ? | NC_000913 | 4346362 = | 523 (1.030) | 3 (0.010) | 3/266 | NT | 0.59% | coding (965/1647 nt) | fumB | anaerobic class I fumarate hydratase (fumarase B) |
| ? | NC_000913 | 4346396 = | 504 (1.030) | coding (931/1647 nt) | fumB | anaerobic class I fumarate hydratase (fumarase B) | |||||
| * | ? | NC_000913 | = 4165497 | 456 (0.890) | 3 (0.010) | 3/262 | NT | 0.68% | coding (70/858 nt) | murI | glutamate racemase |
| ? | NC_000913 | = 4165519 | 440 (0.910) | coding (92/858 nt) | murI | glutamate racemase | |||||
| * | ? | NC_000913 | = 4128796 | 536 (1.050) | 7 (0.010) | 5/266 | NT | 1.3% | coding (125/1161 nt) | metB | cystathionine gamma‑synthase, PLP‑dependent |
| ? | NC_000913 | = 4128815 | 519 (1.060) | coding (144/1161 nt) | metB | cystathionine gamma‑synthase, PLP‑dependent | |||||
| * | ? | NC_000913 | 4081265 = | 475 (0.930) | 3 (0.010) | 3/258 | NT | 0.67% | coding (596/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit |
| ? | NC_000913 | 4081304 = | 451 (0.950) | coding (557/636 nt) | fdoI | formate dehydrogenase‑O, cytochrome b556 subunit | |||||