mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 65 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4628743 = | NA (NA) | 6 (0.010) | 5/262 | NT | 1.0% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628776 = | 594 (1.150) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4583170 | 495 (0.910) | 7 (0.010) | 5/264 | NT | 1.5% | intergenic (‑122/+79) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583190 | 477 (0.920) | intergenic (‑142/+59) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4534771 | 536 (0.990) | 9 (0.020) | 5/268 | NT | 1.7% | intergenic (‑96/‑20) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor |
| ? | NC_000913 | = 4534785 | 510 (0.970) | intergenic (‑110/‑6) | yjhZ/yjhR | pseudogene, rimK paralog, C‑terminal fragment/pseudogene, helicase family; putative frameshift suppressor | |||||
| * | ? | NC_000913 | 4533361 = | 578 (1.060) | 5 (0.010) | 5/260 | NT | 0.94% | coding (424/546 nt) | yjhQ | GNAT family putative N‑acetyltransferase |
| ? | NC_000913 | 4533388 = | 506 (0.990) | coding (397/546 nt) | yjhQ | GNAT family putative N‑acetyltransferase | |||||
| * | ? | NC_000913 | 4389174 = | 610 (1.120) | 4 (0.010) | 3/262 | NT | 0.72% | coding (197/3324 nt) | mscM | mechanosensitive channel protein, miniconductance |
| ? | NC_000913 | 4389211 = | 531 (1.030) | coding (160/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | NC_000913 | 4355312 = | 610 (1.120) | 3 (0.010) | 3/270 | NT | 0.52% | coding (1100/1458 nt) | dtpC | dipeptide and tripeptide permease |
| ? | NC_000913 | 4355349 = | 549 (1.030) | coding (1063/1458 nt) | dtpC | dipeptide and tripeptide permease | |||||
| * | ? | NC_000913 | = 4348426 | 575 (1.060) | 4 (0.010) | 3/266 | NT | 0.72% | coding (319/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | NC_000913 | = 4348453 | 546 (1.040) | coding (292/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | NC_000913 | 4277024 = | 590 (1.090) | 6 (0.010) | 5/270 | NT | 1.0% | coding (1554/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 4277056 = | 557 (1.050) | coding (1586/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 4243350 | 580 (1.070) | 5 (0.010) | 4/262 | NT | 0.90% | coding (167/891 nt) | malG | maltose transporter subunit |
| ? | NC_000913 | = 4243364 | 553 (1.070) | coding (153/891 nt) | malG | maltose transporter subunit | |||||
| * | ? | NC_000913 | 4238068 = | 637 (1.170) | 3 (0.010) | 3/268 | NT | 0.51% | coding (435/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein |
| ? | NC_000913 | 4238106 = | 554 (1.050) | coding (473/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||