New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1465092 =	170 (1.880)	9 (0.110)	8/252	NT	5.6%	intergenic (+31/+73)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
	?	NC_000913	1465125 =	147 (1.770)					intergenic (+64/+40)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein

CAGGTGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1465250‑1465092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAGG  >  NC_000913/1465125‑1465272                                                                                                                                                                                                                                                                                                                     CAGGTGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAAC                                                                                                                                                                >  2:918425/1‑149    GTGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCT                                                                                                                                                             <  2:1246482/149‑1    GTGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCT                                                                                                                                                             >  1:1493306/1‑149     TGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTG                                                                                                                                                            >  2:1308339/1‑149      tAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGC                                                                                                                                                           <  1:361203/148‑1       AATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCT                                                                                                                                                          <  1:368885/149‑1        ATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTT                                                                                                                                                         <  2:17991/149‑1        ATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTT                                                                                                                                                         >  2:1225676/1‑149         TAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTT                                                                                                                                                        >  1:1411300/1‑149         TAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTAAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTa                                                                                                                                                        >  2:1102282/1‑148          AAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTA                                                                                                                                                       <  1:990604/149‑1           AAAAAATACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAAACAAATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT                                                                                                                                                      <  1:1204937/149‑1           AAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCATATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT                                                                                                                                                      <  2:576701/149‑1           AAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT                                                                                                                                                      <  1:339049/149‑1                                                                                              ATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTt                                                                   >  1:1250851/1‑148                                                                                                                   ATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTa                                              >  2:86675/1‑148                                                                                                                     ACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCAT                                            >  2:1473521/1‑149                                                                                                                       TCAAATAAATAAAGCAGAGCTTAAACATGACTCTGGTTTATTTATTTGAGTATTAATTCATAGCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTTTAATTTATATTATATACACAATTTATATATTTCATGG                                          >  1:1534833/1‑149                                                                                                                           ATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATAATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTT                                      >  2:1137536/1‑149                                                                                                                              AATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTT                                   >  2:1578342/1‑149                                                                                                                               ATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTT                                  >  2:830794/1‑149                                                                                                                               ATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCATTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTT                                  >  1:1336993/1‑149                                                                                                                                  AAGCAGAGCTTAAACAAAACTCAGCTTAATTTATTTGAGTATTTATTCATACCGTGTTTTCATCATATAATTATGTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGTAATTTATTTAT                               >  1:995968/1‑149                                                                                                                                                     CTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTATTTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT            >  2:206129/1‑149                                                                                                                                                     CTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT            >  2:416587/1‑149                                                                                                                                                     CTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT            >  1:247398/1‑149                                                                                                                                                      TCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTG           >  1:493022/1‑149                                                                                                                                                      TCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTG           <  1:1473521/149‑1                                                                                                                                                        TGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAA         <  1:353399/149‑1                                                                                                                                                         GCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAAT        <  2:1021511/149‑1                                                                                                                                                          CTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATT       >  2:1343840/1‑149                                                                                                                                                          CTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATT       >  2:1053455/1‑149                                                                                                                                                          CTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATT       <  2:1557724/149‑1                                                                                                                                                           TTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTA      >  1:1232818/1‑149                                                                                                                                                            TTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTAT     >  1:445358/1‑149                                                                                                                                                            TTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTAT     >  1:342793/1‑149                                                                                                                                                             TATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATA    <  2:1278156/149‑1                                                                                                                                                             TATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATA    <  2:31447/149‑1                                                                                                                                                             TATTTATTTGAGTATTAATTCATACAGTTTTTTCATCATATAATTATTTATTATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATA    <  1:428819/149‑1                                                                                                                                                              ATTTATTTGAGTATTAATTCATACCTTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAG   <  1:410325/149‑1                                                                                                                                                              ATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAG   <  1:467270/149‑1                                                                                                                                                              ATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAG   <  2:823762/149‑1                                                                                                                                                               TTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAGt  >  1:47140/1‑148                                                                                                                                                               TTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAGt  >  1:1584083/1‑148                                                                                                                                                               TTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAGG  >  2:865557/1‑149                                                                                                                                                               TTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTAAACTGAATTATAATTGTGAATTATAGG  >  2:120035/1‑149                                                                                                                                                                                                                                                                                                                     CAGGTGAATAAAAAAAGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1465250‑1465092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGTGAATTATAGG  >  NC_000913/1465125‑1465272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.