New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 255935267 (0.740)4 (0.050) 3/264 NT 5.3% coding (495/1209 nt) intZ CPZ‑55 prophage; putative phage integrase
?NC_000913 = 2559381 78 (0.900)coding (524/1209 nt) intZ CPZ‑55 prophage; putative phage integrase

CCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2559201‑2559352
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGTAATGCCAGCACGTCACGGGCGGTTATATCGACAATCGACCGCTTGCCAAGTACCGGATAGACGTCTTTTTCTAGTGCCGATCTGACCT  <  NC_000913/2559381‑2559237
                                                                                                                                                                                                                                                                                                         
CCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGCCGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCGTGACGTGCGGGCATTTAGCCCGAAGAAATTACGTACCGCcc                                                                                                                                                     >  2:1023812/1‑147
 CAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCATAAGAAAGAACGTACCGCAC                                                                                                                                                     >  2:727565/1‑149
  AGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACC                                                                                                                                                    >  1:1109093/1‑149
  AGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACC                                                                                                                                                    >  2:382031/1‑149
                                             CGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGT                                                                                                         <  1:382031/149‑1
                                                      AAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTC                                                                                                <  2:1143635/149‑1
                                                      AAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTC                                                                                                <  2:370425/149‑1
                                                               TCTATCCGGTACTTGTCAAGCGGGCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGTAAT                                                                                       <  2:1087037/149‑1
                                                                                                                                                    ACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGTAATGCCAGCACGTCACGGGCGGTTATATCGACAATCGACCGCTTGCCAAGTACCGGATAGACGTCTTTTTCTAGTGCCGATCTGACCT  <  1:1285723/149‑1
                                                                                                                                                    ACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGTAATGCCAGCACGTCACGGGCGGTTATATCGACAATCGACCGCTTGCCAAGTACCGGATAGACGTCTTTTTCTAGTGCCGATCTGACCT  >  2:470467/1‑149
                                                                                                                                                    ACCGATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGAAATGCCAGCACGTCACGGGCGGTTATATCGACAATCGACCGCTTGCCAAGTACCGGATAGACGTCTTTTTCTAGTGCCGATCTGACCT  <  1:184948/149‑1
                                                                                                                                                                                                                                                                                                         
CCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2559201‑2559352
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgATGCGCCGGCGTAGCTTGCGGGCCTGCTCCGGTGCGGTACGTTCTTTCTTCTGGAGTAATGCCAGCACGTCACGGGCGGTTATATCGACAATCGACCGCTTGCCAAGTACCGGATAGACGTCTTTTTCTAGTGCCGATCTGACCT  <  NC_000913/2559381‑2559237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.