| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4574406 = | 109 (1.210) | 3 (0.030) | 3/262 | NT | 2.9% | pseudogene (488/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | NC_000913 | 4574441 = | 95 (1.100) | pseudogene (523/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4574559‑4574406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGTGCC > NC_000913/4574441‑4574586 CCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAG > 1:357278/1‑149CCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAG > 2:840360/1‑149 CACCTAATAGTGCACCCCGGAAGGGCTGTTACCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACACCAATACGGCGCGTCTGACGGTCGAGG < 2:259469/149‑1 ATTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGT > 1:375596/1‑149 TTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTG > 1:881860/1‑149 ATAACGCCAATACGGCGCGTCTGACGGTCGAGGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACATATGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTAT > 2:1319784/1‑149 GGCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGT < 2:1393745/149‑1 GCGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGTG < 2:1470068/149‑1 CGTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGTGC < 2:1479543/149‑1 GTTATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCATTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGTGCC > 1:324912/1‑149 GTTATTAACAATGACAGCATTCCGCTGATTAATAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCAATTTTACGTTACTAATATCGTGCC > 1:1020675/1‑149 CCACCTAATAGTGCACGCCGGAAGGGCTGTTTCCCACTCATGCCTCTGTAGCCACAGCCACTGGCACTACAAACCTGTTCAATATCATTAATAATCAGCGGAATGCTGTCATTGTTAATAACGCCAATACGGCGCGTCTGACGGTCGAGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4574559‑4574406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgttATTAACAATGACAGCATTCCGCTGATTATTAATGATATTGAACAGGTTTGTAGTGCCAGTGGCTGTGGCTACAGAGGCATGAGTGGGAAACAGCCCTTCCGGCGTGCACTATTAGGTGGGCCATTTTACGTTACTAATATCGTGCC > NC_000913/4574441‑4574586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |