New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	939013 =	63 (0.700)	5 (0.060)	5/266	NT	7.3%	coding (1020/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase
	?	NC_000913	939068 =	66 (0.750)					coding (1075/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase

GCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATC  >  NC_000913/938867‑939161                                                                                                                                                   |                                                                                                                                                      gcgcgTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGc                                                                                                                                                     >  2:1102412/1‑149 (MQ=255)  ggaagtaaacctcaccggcagcataagcgtttgcttcatcatgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccgtcacgtcataatccgggcgttcgcgagcatcGGcc                                                                                                                                                    >  1:1123040‑M1/146‑149 (MQ=255)      tCGCTGTCTGGAGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGCTGGCAATTGCGGCATGGGATTGCTTTACTCTCTATGGCCCGGCGGAAGGTGAACGCGACATTTCGCACGCGATTTTTTACCTTGACTgcg                                                                                                                                                >  2:267397/1‑149 (MQ=255)           cctcaccggcagcataagcgtttgcttcatcatgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcg                                                                                                                                                       >  1:666699‑M1/137‑137 (MQ=255)           cctcaccggcagcataagcgtttgcttcatcatgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcg                                                                                                                                                       <  2:666699‑M1/1‑1 (MQ=255)               ggCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCaaaaa                                                                                                                                       <  1:320512/149‑1 (MQ=255)                ccggcagcataagcgtttgcttcatcatgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAg                                                                                                                                      <  1:1513233‑M1/18‑1 (MQ=255)                 cGATTGCGTCTGAAGACGTCGGTAATGCCGAGCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGc                                                                                                                                     <  2:809518/149‑1 (MQ=255)                       cGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCt                                                                                                                               <  2:1241761/149‑1 (MQ=255)                       cGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCt                                                                                                                               >  1:696601/1‑149 (MQ=255)                        gTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTg                                                                                                                              >  2:766319/1‑149 (MQ=255)                        gTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTg                                                                                                                              <  1:481641/149‑1 (MQ=255)                          cTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTc                                                                                                                            >  1:78222/1‑149 (MQ=255)                           tGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCt                                                                                                                           >  1:1284004/1‑149 (MQ=255)                             aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTac                                                                                                                         >  2:1108981/1‑149 (MQ=255)                             aaGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTac                                                                                                                         >  2:192080/1‑149 (MQ=255)                              aGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                                                                                                                        <  1:1381823/149‑1 (MQ=255)                              aGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTaca                                                                                                                        <  1:420630/149‑1 (MQ=255)                                  gTCGGTAATGCCGATCCACGGGCGCTGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGc                                                                                                                    >  1:994184/1‑149 (MQ=255)                                  gTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGc                                                                                                                    >  1:1392595/1‑149 (MQ=255)                                    ttcatcatgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGt                                                                                                                  <  1:317760‑M1/38‑1 (MQ=255)                                       tAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑a                                                                                                              >  1:926532/1‑149 (MQ=255)                                         aTGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑aaa                                                                                                            <  2:186215/149‑1 (MQ=255)                                         aTGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑aaa                                                                                                            >  1:362044/1‑149 (MQ=255)                                          tGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTATACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCCGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAg                                                                                                           >  2:559290/1‑149 (MQ=255)                                          atgagcgtaacgatattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAg                                                                                                           >  1:1033000‑M1/106‑149 (MQ=255)                                           gCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAACGCAACGCTGTCTACACTGCGTTT‑AAAGc                                                                                                          >  1:79797/1‑149 (MQ=255)                                            ccGATCCACTGGCGATGCAGGTGTCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGGCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGcc                                                                                                         <  2:626474/149‑1 (MQ=255)                                            ccGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGAGTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGcc                                                                                                         <  1:1167083/149‑1 (MQ=255)                                             cGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCcg                                                                                                        <  2:359210/149‑1 (MQ=255)                                               aTCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGG‑AGGTGAACGCGCCCTTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCgcgc                                                                                                     >  2:314225/1‑149 (MQ=255)                                                       tattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGa                                                                                              >  2:1513233‑M1/93‑149 (MQ=255)                                                       gCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGa                                                                                              >  2:825442/1‑149 (MQ=255)                                                          aTGCAGGTGGCAATTGCGGCCTGGGATTGCTTTTCTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGc                                                                                           >  1:81137/1‑149 (MQ=255)                                                            gCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                         <  1:435451/149‑1 (MQ=255)                                                            gCAGGGGGCAATTGCGGCCGGGGATTGCTTTACTCGCGGTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                         <  1:1470853/149‑1 (MQ=255)                                                            ctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                         >  2:317760‑M1/88‑149 (MQ=255)                                                               ggTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTcgcg                                                                                      >  1:682934/1‑149 (MQ=255)                                                                          cGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAt                                                                           <  2:307575/149‑1 (MQ=255)                                                                           ggCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAtt                                                                          <  1:1362987/149‑1 (MQ=255)                                                                           ggCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAtt                                                                          >  2:532204/1‑149 (MQ=255)                                                                            gCCTGGGAGGGCTCTACTCGCGTTGCCCCGGCGGACGGCGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTa                                                                         <  2:209402/149‑1 (MQ=255)                                                                             ccTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGACTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTAt                                                                        <  1:38252/149‑1 (MQ=255)                                                                                    ttGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGc                                                                 <  2:696601/149‑1 (MQ=255)                                                                                             tCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTAGGACGTGCCGGGTCAtt                                                        >  2:222040/1‑149 (MQ=255)                                                                                             tCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGAGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGACTACACTGCGTTT‑AAAGCCGAGCTGGCCGATGCTCGCGAACGCCCGGTTTATGACGTGCCGGTTCAtt                                                        >  2:790054/1‑149 (MQ=255)                                                                                              cgcgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCTCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCAttt                                                       <  1:1060746/149‑1 (MQ=255)                                                                                              cgcgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCAttt                                                       <  2:1482016/149‑1 (MQ=255)                                                                                                cgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGc                                                     >  1:1372350/1‑149 (MQ=255)                                                                                                 gTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCg                                                    <  1:969717/149‑1 (MQ=255)                                                                                                      cccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATg                                               >  1:1542776/1‑149 (MQ=255)                                                                                                       ccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATgc                                              >  1:1250856/1‑149 (MQ=255)                                                                                                       ccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATgc                                              >  1:1115152/1‑149 (MQ=255)                                                                                                            ggAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCcga                                         <  2:1392595/149‑1 (MQ=255)                                                                                                                ggTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGACCGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaa                                     >  1:1411960/1‑149 (MQ=255)                                                                                                                 gTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaaa                                    <  1:1102412/149‑1 (MQ=255)                                                                                                                  tGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAAt                                   <  2:1243605/149‑1 (MQ=255)                                                                                                                     aCGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCTTAATGCGCCGACGAAATTaa                                >  1:156168/1‑149 (MQ=255)                                                                                                                     aCGCGCCATTGCGCAGGCGAGTGTTTACCTGGCCTGCGCGCGAATAAGCAACGCGGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTaa                                <  2:251078/149‑1 (MQ=255)                                                                                                                         gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGCTGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                            >  2:111862/1‑149 (MQ=255)                                                                                                                         gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                            <  2:362044/149‑1 (MQ=255)                                                                                                                         gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                            <  2:926532/149‑1 (MQ=255)                                                                                                                           cATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAgg                          >  1:1587888/1‑149 (MQ=255)                                                                                                                               gCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAAt                      <  2:1123243/149‑1 (MQ=255)                                                                                                                                 tCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATgg                    <  2:488086/149‑1 (MQ=255)                                                                                                                                   aGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGc                  >  2:1287211/1‑149 (MQ=255)                                                                                                                                     gCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTa                >  2:1438285/1‑149 (MQ=255)                                                                                                                                     gCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTa                >  2:1332947/1‑149 (MQ=255)                                                                                                                                        aTTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACgg             <  2:1115152/149‑1 (MQ=255)                                                                                                                                         ttGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACggg            <  2:161437/149‑1 (MQ=255)                                                                                                                                             ttACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAgg        <  1:119958/149‑1 (MQ=255)                                                                                                                                             ttACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAgg        <  2:79797/149‑1 (MQ=255)                                                                                                                                               aCCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGaa      <  2:1292709/149‑1 (MQ=255)                                                                                                                                                 cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGGGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGATATTTATGAAGGAAATGGGCTACGGGCCGGAatt    >  2:1435891/1‑148 (MQ=255)                                                                                                                                                 cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata    <  2:81137/149‑1 (MQ=255)                                                                                                                                                 cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGATA‑AAAGCCGCGCTGGCCGATGCACGCGAACGCCCGGTTTATGACGTGCCGGATCAATTGCGTAATGCGCCGACGAAATTAATGAAGGCAATGGGCTTCGGGCAGGAata    >  2:1442211/1‑149 (MQ=255)                                                                                                                                                 cTGGCCCGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata    <  1:559290/149‑1 (MQ=255)                                                                                                                                                   GGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAatat   <  1:180348‑M1/149‑1 (MQ=255)                                                                                                                                                   GGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATc  >  2:1284004‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCGCGTCGCTGTCTGGCGATTGCGTCTGAAGACGTCGGTAATGCCGATCCACGGGCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATC  >  NC_000913/938867‑939161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.