New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	939013 =	63 (0.700)	5 (0.060)	5/266	NT	7.3%	coding (1020/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase
	?	NC_000913	939068 =	66 (0.750)					coding (1075/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase

GCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCC  >  NC_000913/938921‑939212                                                                                                                                                     |                                                                                                                                                 tattcctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGa                                                                                                                                                 >  2:1513233‑M1/93‑149 (MQ=255) gCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGa                                                                                                                                                 >  2:825442/1‑149 (MQ=255)    aTGCAGGTGGCAATTGCGGCCTGGGATTGCTTTTCTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGc                                                                                                                                              >  1:81137/1‑149 (MQ=255)      gCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                                                                            <  1:435451/149‑1 (MQ=255)      gCAGGGGGCAATTGCGGCCGGGGATTGCTTTACTCGCGGTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                                                                            <  1:1470853/149‑1 (MQ=255)      ctgcccgtagcccatttccttcattaatttcgtcggcgcattacgcaaatgaaccggcacgtcataatccgggcgttcgcgagcatcGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTc                                                                                                                                            >  2:317760‑M1/88‑149 (MQ=255)         ggTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTcgcg                                                                                                                                         >  1:682934/1‑149 (MQ=255)                    cGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAt                                                                                                                              <  2:307575/149‑1 (MQ=255)                     ggCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAtt                                                                                                                             >  2:532204/1‑149 (MQ=255)                     ggCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGAtt                                                                                                                             <  1:1362987/149‑1 (MQ=255)                      gCCTGGGAGGGCTCTACTCGCGTTGCCCCGGCGGACGGCGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTa                                                                                                                            <  2:209402/149‑1 (MQ=255)                       ccTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGACTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTAt                                                                                                                           <  1:38252/149‑1 (MQ=255)                              ttGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGc                                                                                                                    <  2:696601/149‑1 (MQ=255)                                       tCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTAGGACGTGCCGGGTCAtt                                                                                                           >  2:222040/1‑149 (MQ=255)                                       tCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGAGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGACTACACTGCGTTT‑AAAGCCGAGCTGGCCGATGCTCGCGAACGCCCGGTTTATGACGTGCCGGTTCAtt                                                                                                           >  2:790054/1‑149 (MQ=255)                                        cgcgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCTCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCAttt                                                                                                          <  1:1060746/149‑1 (MQ=255)                                        cgcgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCAttt                                                                                                          <  2:1482016/149‑1 (MQ=255)                                          cgTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGc                                                                                                        >  1:1372350/1‑149 (MQ=255)                                           gTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCg                                                                                                       <  1:969717/149‑1 (MQ=255)                                                cccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATg                                                                                                  >  1:1542776/1‑149 (MQ=255)                                                 ccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATgc                                                                                                 >  1:1250856/1‑149 (MQ=255)                                                 ccGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATgc                                                                                                 >  1:1115152/1‑149 (MQ=255)                                                      ggAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCcga                                                                                            <  2:1392595/149‑1 (MQ=255)                                                          ggTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGACCGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaa                                                                                        >  1:1411960/1‑149 (MQ=255)                                                           gTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGaaa                                                                                       <  1:1102412/149‑1 (MQ=255)                                                            tGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAAt                                                                                      <  2:1243605/149‑1 (MQ=255)                                                               aCGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCTTAATGCGCCGACGAAATTaa                                                                                   >  1:156168/1‑149 (MQ=255)                                                               aCGCGCCATTGCGCAGGCGAGTGTTTACCTGGCCTGCGCGCGAATAAGCAACGCGGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTaa                                                                                   <  2:251078/149‑1 (MQ=255)                                                                   gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGCTGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                                                                               >  2:111862/1‑149 (MQ=255)                                                                   gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                                                                               <  2:926532/149‑1 (MQ=255)                                                                   gcCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGaa                                                                               <  2:362044/149‑1 (MQ=255)                                                                     cATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAgg                                                                             >  1:1587888/1‑149 (MQ=255)                                                                         gCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAAt                                                                         <  2:1123243/149‑1 (MQ=255)                                                                           tCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATgg                                                                       <  2:488086/149‑1 (MQ=255)                                                                             aGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGc                                                                     >  2:1287211/1‑149 (MQ=255)                                                                               gCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTa                                                                   >  2:1438285/1‑149 (MQ=255)                                                                               gCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTa                                                                   >  2:1332947/1‑149 (MQ=255)                                                                                  aTTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACgg                                                                <  2:1115152/149‑1 (MQ=255)                                                                                   ttGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACggg                                                               <  2:161437/149‑1 (MQ=255)                                                                                       ttACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAgg                                                           <  1:119958/149‑1 (MQ=255)                                                                                       ttACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAgg                                                           <  2:79797/149‑1 (MQ=255)                                                                                       gagcatcggccagcgcggctttaaacgcagtgtagacagcgttgctttttggcgcgcaggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAg                                                            >  2:317760‑M2/63‑149 (MQ=255)                                                                                         aCCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGaa                                                         <  2:1292709/149‑1 (MQ=255)                                                                                           cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGGGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGATATTTATGAAGGAAATGGGCTACGGGCCGGAatt                                                       >  2:1435891/1‑148 (MQ=255)                                                                                           cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata                                                       <  2:81137/149‑1 (MQ=255)                                                                                           cTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGATA‑AAAGCCGCGCTGGCCGATGCACGCGAACGCCCGGTTTATGACGTGCCGGATCAATTGCGTAATGCGCCGACGAAATTAATGAAGGCAATGGGCTTCGGGCAGGAata                                                       >  2:1442211/1‑149 (MQ=255)                                                                                           cTGGCCCGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata                                                       <  1:559290/149‑1 (MQ=255)                                                                                            tcggccagcgcggctttaaacgcagtgtagacagcgttgctttttggcgcgcaggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAata                                                       >  2:1513233‑M2/58‑149 (MQ=255)                                                                                             GGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAatat                                                      <  1:180348‑M1/149‑1 (MQ=255)                                                                                             GGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATc                                                     >  2:1284004‑M1/1‑149 (MQ=255)                                                                                              GCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAAt                                                                                                   >  1:1029602‑M1/1‑102 (MQ=255)                                                                                              GCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAAt                                                                                                   <  2:1029602‑M1/102‑1 (MQ=255)                                                                                               CCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGt                                                   >  2:1145798‑M1/1‑149 (MQ=255)                                                                                                  gcgcgcCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTAc                                                <  1:1208372/149‑1 (MQ=255)                                                                                                        cAAAAAGCAACGCTGTCTACACTGCGTTT‑TAAGACGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACCTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCat                                          <  2:78222/149‑1 (MQ=255)                                                                                                        cAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCat                                          >  1:1492973/1‑149 (MQ=255)                                                                                                        cAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTAGCGTAATGCGCCGACGAAATTAAGGAAGGAAATGGGCTACGGGAACGAATATCCTTACGCTCat                                          >  1:256247/1‑149 (MQ=255)                                                                                                         ctttaaacgcagtgtagacagcgttgctttttggcgcgcaggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCat                                          >  1:1033000‑M2/45‑149 (MQ=255)                                                                                                         aaaaaGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatt                                         >  1:514627/1‑148 (MQ=255)                                                                                                          aaaaGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatga                                        >  1:222000/1‑149 (MQ=255)                                                                                                           aaaGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatgat                                       >  1:409687/1‑149 (MQ=255)                                                                                                            aaGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCatgatg                                      <  1:192080/149‑1 (MQ=255)                                                                                                              tcAACGCTGTCTAAAATTCGTTT‑AAAGCAGAGCTGGACGATGCTCTCGAACGCCCTGATTATGACGTGCCGGTTGATTTGCTTAATGCGCCGAAGAAATTAATGAAGGAATTGGGCTACGGGCAGGAATATCGTTACGCTCATGATGaa                                    <  1:267397/148‑1 (MQ=255)                                                                                                              ccAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGaa                                    <  2:994184/148‑1 (MQ=255)                                                                                                               acgcagtgtagacagcgttgctttttggcgcgcaggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGaa                                    <  1:317760‑M2/111‑1 (MQ=255)                                                                                                                   gCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCaaa                               <  2:682934/149‑1 (MQ=255)                                                                                                                      ggcTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTATCGAACGCCAGGATTATGACGTGCCGGTTCATTTGCGTAATGCGACGACGAAATTAATGAATGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATTAAGCAAACGc                            <  1:314225/147‑1 (MQ=255)                                                                                                                          acacTGCGTTT‑AAAGCCGCGCTGTCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCAGTTGCGTAATGCTCCGACGAAATTAATGAAGTAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAt                        <  1:290971/149‑1 (MQ=255)                                                                                                                          acacTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAt                        >  1:979408/1‑149 (MQ=255)                                                                                                                          acacTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAt                        <  1:825442/149‑1 (MQ=255)                                                                                                                           cacTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtg                       <  2:1250856/149‑1 (MQ=255)                                                                                                                              tGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtgctg                    >  1:710456/1‑149 (MQ=255)                                                                                                                              tGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAtgctg                    >  1:1135910/1‑149 (MQ=255)                                                                                                                                  ttt‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCgg                >  1:886935/1‑149 (MQ=255)                                                                                                                                   ctttttggcgcgcaggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCgg                <  1:1513233‑M2/131‑1 (MQ=255)                                                                                                                                      cgcaccGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGa             <  1:1461317/145‑1 (MQ=255)                                                                                                                                      aaaGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGa             <  1:179886/149‑1 (MQ=255)                                                                                                                                         gCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGt          >  1:841775/1‑149 (MQ=255)                                                                                                                                           cgcgCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGttt        >  1:378225/1‑149 (MQ=255)                                                                                                                                           cgcgCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGttt        <  1:1438285/149‑1 (MQ=255)                                                                                                                                               cTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTGCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACtt    <  1:766319/149‑1 (MQ=255)                                                                                                                                                 ggccGATGCTCGCGAACGCCCGGATTATGACGTGACGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTcc  >  1:1123040‑M2/5‑149 (MQ=255)                                                                                                                                                    cGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAgg           <  2:666699‑M2/136‑1 (MQ=255)                                                                                                                                                    cGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAgg           >  1:666699‑M2/2‑137 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCGATGCAGGTGGCAATTGCGGCCTGGGATTGCTTTACTCGCGTTGGCCCGGCGGAAGGTGAACGCGCCATTGCTCAGGCGATTGTTTACCTGGCCTGCGCGCCAAAAAGCAACGCTGTCTACACTGCGTTT‑AAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCC  >  NC_000913/938921‑939212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.