mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.7% | 54.2 / 161.3 | 133 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 281 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 155 (1.200) | 20 (0.160) | 18/280 | 5.5 | 13.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 120 (0.990) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1207805 | 73 (0.560) | 18 (0.160) | 17/266 | 5.5 | 21.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 68 (0.590) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 77 (0.600) | 18 (0.160) | 16/266 | 5.7 | 20.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 68 (0.590) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 155 (1.200) | 10 (0.080) | 10/280 | 7.6 | 7.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 120 (0.990) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4053426 = | 184 (1.420) | 4 (0.050) +59 bp |
4/180 | 7.9 | 3.5% | intergenic (+8/+221) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | NC_000913 | = 4103596 | NA (NA) | intergenic (+100/+6) | yiiM/cpxA | 6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 9 (0.070) | 9/280 | 7.9 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3270131 | 35 (0.270) | 3 (0.040) +58 bp |
3/182 | 8.6 | 6.2% | intergenic (+529/+85) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | = 3270333 | 113 (0.870) | noncoding (260/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | = 3270018 | 28 (0.220) | 3 (0.040) +58 bp |
3/182 | 8.6 | 6.5% | intergenic (+416/+198) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913 | = 3270333 | 113 (0.870) | noncoding (260/377 nt) | rnpB | RNase P, M1 RNA component | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 11 (0.090) | 7/284 | 8.7 | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3083839 | 168 (1.300) | 11 (0.090) | 7/280 | 8.7 | 6.3% | intergenic (‑42/+96) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | = 3083858 | 171 (1.410) | intergenic (‑61/+77) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||