New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	618054 =	114 (1.020)	7 (0.070)	5/252	NT	6.4%	intergenic (+16/‑200)	entF/fepE	enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains
	?	NC_000913	618087 =	103 (1.010)					intergenic (+49/‑167)	entF/fepE	enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains

CCACGGCGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/618214‑618054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taattatgggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACT  >  NC_000913/618087‑618234                                                                                                                                                                                                                                                                                                                       CCACGGCGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATTCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAAACCATAATTATTTTCTGTA                                                                                                                                                                 >  2:1317544/1‑150 CCACGGCGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCAATAATTATTTTCTGTA                                                                                                                                                                 >  1:373208/1‑150  CACGGCGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAA                                                                                                                                                                <  1:1476415/150‑1       CGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATG                                                                                                                                                           <  1:1557394/150‑1       CGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATAAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATt                                                                                                                                                           >  1:341266/1‑149           CACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTT                                                                                                                                                       >  2:1530432/1‑150           CACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTT                                                                                                                                                       >  1:528272/1‑150           CACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTT                                                                                                                                                       >  1:637879/1‑150            ACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTT                                                                                                                                                      <  2:883163/150‑1                                                                                                                  AATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATC                                                >  2:573632/1‑150                                                                                                                      AAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCA                                            >  2:976762/1‑150                                                                                                                      AAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCA                                            >  2:1209001/1‑150                                                                                                                      AAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGCGTTTTTTATTTGTTTGATATATAGGTATGATGAATATTTCTCTTAAATAGAGTGAATCTTGCATTCAGTGGAAGGAATTTACAATCTTAAGCTTCGGATAATTATCACCA                                            >  2:78329/1‑150                                                                                                                        ACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAAg                                          >  1:1137439/1‑149                                                                                                                           AATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGG                                       >  1:445226/1‑150                                                                                                                                  AACCCATAATTATTTTCTGTAATTATGGGTTTTTTATTTTTTTGATGTATATGTTTTATTAATATTTCACTTATATAGATTGAATGTAGCATTCAGTGGAATAAAATTACAAACTTCAGCTTCGGATAATTATCACAAACTGGGAAAGTG                                >  2:267818/1‑150                                                                                                                                                     TAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCC             <  1:1169034/150‑1                                                                                                                                                     TAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCC             <  1:539041/150‑1                                                                                                                                                        TTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCT          >  1:169578/1‑150                                                                                                                                                            GGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTG      <  2:634088/150‑1                                                                                                                                                            GGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTG      >  1:1217462/1‑150                                                                                                                                                             GGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGG     >  2:1806054/1‑150                                                                                                                                                              ggTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGA    >  2:473536/3‑150                                                                                                                                                               TTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAC   <  2:1290551/150‑1                                                                                                                                                               TTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAAAAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAC   <  2:730372/150‑1                                                                                                                                                                TTTTTATTTGTTTGATTTATAGGTTTGAAGAATATTTCTCTTAAATAGAGTGAATGGTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACT  <  2:380474/150‑1                                                                                                                                                                                                                                                                                                                       CCACGGCGCTCACTTTACCAGTTGGTGATAATTATCCGAAGCTGAAGTTTGTAAATTCCTTCCACTGAATGCAACATTCACTCTATTTAAGAGAAATATTCATCAAACCTATAAATCAAACAAATAAAAAACCCATAATTATTTTCTGTAATTATGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/618214‑618054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taattatgggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGACT  >  NC_000913/618087‑618234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.