| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3462359 | 85 (0.860) | 6 (0.070) | 4/258 | NT | 6.8% | coding (16/588 nt) | gspJ | putative general secretory pathway component, cryptic |
| ? | NC_000913 | = 3462390 | 85 (0.930) | coding (47/588 nt) | gspJ | putative general secretory pathway component, cryptic | |||||
GAGTGGAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3462202‑3462359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgccagcGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGCGTG < NC_000913/3462390‑3462243 GAGTGGAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAA > 1:1705266/1‑150 AGTGGAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAAa > 2:1284551/1‑149 GTGGAACTGGCGCAGCGATATCCACTCAAGAAAAGACGGAACGCTTCTGGAACGCAACATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAAAAAAACCGGGAAGGCACAAGATGATTAATC > 2:1178095/1‑150 gGGAACTGGCGCAGCGATATCCACTGAAGCAAAGTCGGCACGCTTCTGGAACGCTCCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCG < 2:1669685/149‑1 GGAACTGGCGCAGCGATATCCACTCAAGCAAAGCCGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCGTACACGTTTTAAAAGCATCTATAATAAATCGGGGCAGGCACAAGTTGATTAAGCGC > 2:252750/1‑150 GGAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCCCGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGC < 2:448904/150‑1 GAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCC < 1:1227169/150‑1 GAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCC < 2:392725/150‑1 acaGGCGCAGCGATATCCACTCAACCAAAGACCGCACGCTTCTGGAACGCACCAAAACGGTGACATTACCCAGCGGTCACACAACCTCGCTTACGCGTTATCAAAGCAACGAAAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAa > 1:1346183/4‑149 ACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAG > 1:59430/1‑150 ACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAG < 1:972574/150‑1 ACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAG > 1:1470249/1‑150 CTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCTCAAGATGATTAATCGCCAGC > 1:153718/1‑150 CTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAGC < 1:707799/150‑1 CTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCTCTTACGCGTTATCAAAGAATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGAT < 2:1063828/150‑1 CTGGAACGAACAATAACGTTGAGATTACACAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGTCGGGCACAAGATGATTAATCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGAT < 1:195601/150‑1 CGCCCCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAACTCCGGGCAGGCACAAGATGATTAATCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCA < 1:1002641/150‑1 CACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAAT‑‑‑‑‑‑‑‑‑CGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTG < 1:596195/150‑1 CACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAAT‑‑‑‑‑‑‑‑‑CGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTG < 1:741968/150‑1 CCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATAATCGATGCTTTGAT < 2:47903/150‑1 AATCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCA < 2:1006018/150‑1 TCGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGA < 2:925105/150‑1 CGCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAA > 2:59430/1‑150 GCCAGCGCCGCCATGCCCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAG > 1:737114/1‑150 GCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCTGATTTATTATCGATTCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGAGTTCCAGAAG > 2:1120104/1‑150 GCCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAG > 1:1317010/1‑150 CCAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGC > 2:1547411/1‑150 CAGCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGCG < 2:750514/150‑1 GCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGCGTG < 1:793652/150‑1 GCGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCCGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGCGTG > 2:1469890/1‑150 GAGTGGAACTGGCGCAGCGATATCCACTCAAGCAAAGACGGCACGCTTCTGGAACGCACCATAACGGTGACATTACCCAGCGGTCAGACAACCTCGCTTACGCGTTATCAAAGCATCGATAATAAATCCGGGCAGGCACAAGATGATTAATCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3462202‑3462359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcgccagcGCCGCCATGACCTCCAGCAATGTGAAACCCTGCTGGCGATTAATCATCTTGTGCCTGCCCGGATTTATTATCGATGCTTTGATAACGCGTAAGCGAGGTTGTCTGACCGCTGGGTAATGTCACCGTTATGGTGCGTTCCAGAAGCGTG < NC_000913/3462390‑3462243 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |