mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 45.8% | 7.5 / 89.2 | 76 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,269,956 | 0 | T | C | 24.4% | 60.8 / 19.4 | 45 | intergenic (+354/+260) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 4,208,230 | 0 | T | A | 21.2% | 54.9 / 13.0 | 33 | noncoding (84/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| * | NC_000913 | 4,208,231 | 0 | T | A | 21.2% | 53.9 / 11.0 | 33 | noncoding (85/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| Marginal new junction evidence (lowest skew 10 of 249 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 224059 = | NA (NA) | 17 (0.230) | 13/282 | 4.2 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 4578928 | 128 (1.620) | 6 (0.080) | 6/284 | 6.3 | 4.5% | coding (410/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB |
| ? | NC_000913 | = 4579012 | 133 (1.750) | coding (326/1380 nt) | mcrB | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrB | |||||
| * | ? | NC_000913 | = 3621583 | NA (NA) | 6 (0.080) | 6/284 | 6.3 | 100% | coding (2392/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3621667 | 0 (0.000) | coding (2476/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1051877 = | 76 (0.960) | 7 (0.090) | 6/282 | 6.3 | 8.8% | coding (31/231 nt) | ymcE | cold shock gene |
| ? | NC_000913 | 1051896 = | 73 (0.970) | coding (50/231 nt) | ymcE | cold shock gene | |||||
| * | ? | NC_000913 | = 502929 | 70 (0.880) | 6 (0.080) | 6/284 | 6.3 | 8.8% | coding (310/1677 nt) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| ? | NC_000913 | = 502972 | 57 (0.750) | coding (267/1677 nt) | ybaL | inner membrane putative NAD(P)‑binding transporter | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 6 (0.080) | 6/284 | 6.3 | NA | noncoding (1163/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274057 = | NA (NA) | noncoding (1093/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 223936 = | NA (NA) | 6 (0.080) | 6/280 | 6.3 | NA | noncoding (166/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224021 = | NA (NA) | noncoding (251/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3622466 = | NA (NA) | 7 (0.090) | 6/288 | 6.4 | 12.4% | coding (3275/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3622497 = | 51 (0.640) | coding (3306/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 1396498 = | NA (NA) | 7 (0.090) +CGC |
6/290 | 6.4 | 9.5% | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428369 | 68 (0.860) | noncoding (426/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 734724 = | 63 (0.800) | 7 (0.090) | 6/288 | 6.4 | 10.2% | pseudogene (592/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 3622501 = | NA (NA) | coding (3310/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||