| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 270109 = | 59 (0.770) | 4 (0.060) | 4/262 | NT | 6.7% | coding (74/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 270171 = | NA (NA) | coding (12/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/270265‑270109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttttgcTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC > NC_000913/270171‑270319 GTTGTTCTGAGGTGAGCTTATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTCAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAG < 2:114819/150‑1GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAG < 2:957701/150‑1 TTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGTTGGTCGTACCGGAGC < 2:273473/150‑1 TGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCT < 2:522651/150‑1 CTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTt > 2:497152/1‑149 CTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATACCTTGTGAATAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTTCCGGTGCTTTTG < 2:481549/150‑1 CTGAGGTGAGCATATCACCTATGTTCAGGTGTCCAAATTCAGTAACCCACATCATCCCTAGTGAAAAGGATTTATGAATGAAGCTCTTATCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTAACGGAGCTTTTG < 2:1266191/150‑1 CTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGCGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTATACTGAATTTGGCCACCTGAACGGAGGTGATATGCTC > 2:323153/1‑150 TCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCA > 1:709027/1‑150 CTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCAC > 2:349940/1‑150 TAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCT > 2:367129/1‑150 GCTTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACG < 1:1167425/150‑1 TTTTGCTAAGAGCTTCATTCTTGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATTATGAAAACAAGAAATTTCAGCGCAGAGTTTAAACGCG < 2:1237218/150‑1 TTTTGCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCG > 2:937841/1‑150 GCTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTTCTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGTTGTCATAATGAAAAAAAGAAATTTCAGAGCAGAGTTTAAACGCGAATC > 1:68270/1‑150 CTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGTTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGGTTAATCGCGAATCC > 1:1064760/1‑150 CTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCt < 2:1115809/150‑2 CTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC > 2:1002347/1‑150 GTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCATCCCTAGTGAAAAGGATTCATGAATGAAGCTCTTAGCAAAAGCACCTCTAAATCTGTTACGCGCCTTTGAAGCGGCTGGTCGTACCGGAGCTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/270265‑270109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttttgcTAAGAGCTTCATTCATGAATCCTTTTCACTAGGGATGAAGTGGTTTACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCC > NC_000913/270171‑270319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |