New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3808280 =	64 (0.840)	3 (0.040)	3/258	NT	5.9%	intergenic (‑182/‑260)	waaQ/waaA	lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
	?	NC_000913	3808320 =	36 (0.510)					intergenic (‑222/‑220)	waaQ/waaA	lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)

TGATCTGCCGCTACATCTTCATTTTTTTTGTATTTTTATGCGATTCATTGAAACTCGGCCCCATTTTCAAATCTACATAGGCCGTACTGACATTATCGAAATGCTATTTTTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTATAAAAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3808438‑3808280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAA  >  NC_000913/3808320‑3808467                                                                                                                                                                                                                                                                                                                     TGATCTGCCGCTACATCTTCATTTTTTTTGTATTTTTATGCGATTCATTGAAACTCGGCCCCATTTTCAAATCTACATAGGCCGTACTGACATTATCGAAATGCTATTTTTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTA                                                                                                                                                               >  1:1240567/1‑150  GATCTGCCGCTACATCTTCATTTTTTTTGTATTTTTATGCGATTCATTGAAACTCGGCCCCATTTTCAAATCTACATAGGCCGTACTGACATTATCGAAATGCTATTTTTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTAT                                                                                                                                                              >  1:7213/1‑150     cttCCGCTACAACTTCATTTTTTTTGTATTTTTATGCGATTCATTGAAACTCGGCCCCATTTTCAAATCTACATAGGCCGTACAGACATTATCGAAATGCTATTTTTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTATAAA                                                                                                                                                           <  2:636324/147‑1                                                                                                              TTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATG                                                  >  2:148849/1‑150                                                                                                                  TCTATTTGATTTTTATGATTAAAGTATATTTTGTGTATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGA                                              >  2:453039/1‑150                                                                                                                      TTTGATTTTTATGATTAAAGTATATTTTGTGTATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGACTATGTAGATTTGAAAATGTGGCCGATTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTA                                          >  1:906484/1‑150                                                                                                                                                          AAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCA      <  1:1238759/150‑1                                                                                                                                                           atTCAAATATATAAAAAATAGAATTTCGATAATGTCAGTACGTCCTATTTAGATTTGAAAATGGGTCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAA     <  1:188484/148‑1                                                                                                                                                            ATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAA    <  1:1264395/150‑1                                                                                                                                                              CAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAATAAATGAAGATGTAGCGGCAGATCAGGCCAAACTGAAGCTATTTAATTCAAAAA  >  2:853705/1‑150                                                                                                                                                                                                                                                                                                                     TGATCTGCCGCTACATCTTCATTTTTTTTGTATTTTTATGCGATTCATTGAAACTCGGCCCCATTTTCAAATCTACATAGGCCGTACTGACATTATCGAAATGCTATTTTTTATCTATTTGATTTTTATGATTAAAGTATATTTTGTGTATAAAAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3808438‑3808280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaaaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAA  >  NC_000913/3808320‑3808467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.