New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3808280 =	64 (0.840)	3 (0.040)	3/258	NT	5.9%	intergenic (‑182/‑260)	waaQ/waaA	lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
	?	NC_000913	3808320 =	36 (0.510)					intergenic (‑222/‑220)	waaQ/waaA	lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)

CAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAA  >  NC_000913/3808172‑3808467                                                                                                                                                     |                                                                                                                                                     tacatcttcattttttttgtatttttatgcgattcattgaaaatcggccacattttcaaatctacatagtccgtactgacattatcgaaatgctattttttatctattTGATTTTTATACACAAAATATACTTTAATCATAAAAATCaaa                                                                                                                                                     >  1:906484‑M1/109‑150 (MQ=255)    aaaaaaGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAg                                                                                                                                                  <  1:1006386/150‑1 (MQ=255)     tcttcattttttttgtatttttatgcgattcattgaaactcggccccattttcaaatctacataggccgtactgacattatcgaaatgctattttttatctattTGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGa                                                                                                                                                 >  2:453039‑M1/105‑150 (MQ=255)         cattttttttgtatttttatgcgattcattgaaactcggccccattttcaaatctacataggccgtactgacattatcgaaatgctattttttatctattTGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATaaa                                                                                                                                             >  2:148849‑M1/101‑150 (MQ=255)          gCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAATATCAAATAGATaaaa                                                                                                                                            >  2:1253360/1‑150 (MQ=255)             cGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAAt                                                                                                                                         <  2:343247/150‑1 (MQ=255)                   cGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCAtt                                                                                                                                   >  2:776185/1‑150 (MQ=255)                    gCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCAttt                                                                                                                                  >  2:160890/1‑150 (MQ=255)                    gCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGAAttt                                                                                                                                  >  1:1160305/1‑150 (MQ=255)                            cTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAAtt                                                                                                                          >  2:188484/1‑149 (MQ=255)                            cTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATg                                                                                                                          >  1:1100844/1‑150 (MQ=255)                                  agctagctGTATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTGTTTCGCAGCAATCCGACCCCAATGATTTTTATTCACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTa                                                                                                                    <  2:124816/150‑1 (MQ=255)                                  aGCTACCTGAATACTGATAAAGCTCTTACTTTGAATTTCTAGTGAATCATTTCTTTAGCATCAATCCGACACGAATGATTTTTATACACTAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTa                                                                                                                    <  1:205712/150‑1 (MQ=255)                                     tACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCATCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACgg                                                                                                                 <  2:1047689/150‑1 (MQ=255)                                      aCCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGCCCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGc                                                                                                                >  2:1089137/1‑150 (MQ=255)                                         tGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTa                                                                                                             >  2:1238759/1‑150 (MQ=255)                                                   tAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACGCGCATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTg                                                                                                   <  2:364866/150‑1 (MQ=255)                                                    aaCGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGAATTTCGATAATGTCAGTACGGGCTATGTTGATTTGa                                                                                                  >  2:1277144/1‑150 (MQ=255)                                                         acttacttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATg                                                                                             >  2:1264395/1‑150 (MQ=255)                                                         acttacttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATg                                                                                             >  2:547272/1‑150 (MQ=255)                                                          cttacttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATgg                                                                                            <  1:1033801/150‑1 (MQ=255)                                                            tacttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATATCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAATATgggg                                                                                          >  2:885894/1‑150 (MQ=255)                                                             acttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGc                                                                                         <  2:1127004/150‑1 (MQ=255)                                                              cttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATTCTTTAATCATAAAAATCAAATAGATATAAAATAGCATTTCGATAATGTCAGTAAGGCCTATGAAGATTTGAAAATGGGGcc                                                                                        >  1:145083/1‑150 (MQ=255)                                                              cttTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGcc                                                                                        <  2:1050747/150‑1 (MQ=255)                                                                ttGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGa                                                                                      >  2:35065/1‑150 (MQ=255)                                                                 tGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGat                                                                                     >  1:129525/1‑149 (MQ=255)                                                                  gACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGt                                                                                    <  2:712887/150‑1 (MQ=255)                                                                     gTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTc                                                                                 <  2:571767/150‑1 (MQ=255)                                                                      tGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGCACTATGTAGATTTCAAAATGGGGCAGAGTTTCa                                                                                >  2:598695/1‑150 (MQ=255)                                                                                      ctttcGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCTTaaaaa                                                                >  2:178239/1‑150 (MQ=255)                                                                                         tcGCAGCAATCCTACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAc                                                             <  1:252243/150‑1 (MQ=255)                                                                                              gcaATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑aaaaa                                                       >  1:503983/1‑150 (MQ=255)                                                                                                   tttatctatttgatttttatgattaaagtatattttgtgtataaaaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATg                                                  >  2:148849‑M2/51‑150 (MQ=255)                                                                                                   ccGACCCGCATGATTTTAATACACAAAATATACTATAATCATAAAAATCAAATACATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATg                                                  <  1:621288/150‑1 (MQ=255)                                                                                                     gACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATTAATCGCATAAAAATAC‑AAAAAAAATGaa                                                >  2:538795/1‑150 (MQ=255)                                                                                                       tctatttgatttttatgattaaagtatattttgtgtataaaaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGa                                              >  2:453039‑M2/47‑150 (MQ=255)                                                                                                           tttgatttttatgattaaagtatattttgtgtataaaaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGACTATGTAGATTTGAAAATGTGGCCGATTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTa                                          >  1:906484‑M2/43‑150 (MQ=255)                                                                                                           aaTGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTa                                          >  1:906452/1‑150 (MQ=255)                                                                                                                  TTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCTGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGTTGTagcggaag                                   <  2:636324‑M1/150‑4 (MQ=255)                                                                                                                     ATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATc                                >  1:7213‑M1/1‑150 (MQ=255)                                                                                                                      TACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCa                               >  1:1240567‑M1/1‑150 (MQ=255)                                                                                                                       acacAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAAATGAAGATGTAGCGGCAGATCa                               <  2:835689/150‑1 (MQ=255)                                                                                                                              atatACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTATATTTGAAAATTGGGCCGAGTTTCAATGAATCGCATAAAAAAAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAAc                       <  2:1092931/150‑1 (MQ=255)                                                                                                                                ataCTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTg                     <  1:1299342/150‑1 (MQ=255)                                                                                                                                     ttAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGAAAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCt                <  1:160890/150‑1 (MQ=255)                                                                                                                                         tCATAAAAATCAAATAGATAAAAAATAGCATTTCTATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTAttt            <  1:130011/150‑1 (MQ=255)                                                                                                                                         tCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACAAAACTGAAGCTAttt            >  2:1215256/1‑150 (MQ=255)                                                                                                                                               aaatcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCa      <  1:1238759‑M2/144‑1 (MQ=255)                                                                                                                                                attcaAATATATAAAAAATAGAATTTCGATAATGTCAGTACGTCCTATTTAGATTTGAAAATGGGTCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCaa     <  1:188484‑M2/145‑1 (MQ=255)                                                                                                                                                 atcaAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCaaa    <  1:1264395‑M2/146‑1 (MQ=255)                                                                                                                                                   caAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAATAAATGAAGATGTAGCGGCAGATCAGGCCAAACTGAAGCTATTTAATTCaaaaa  >  2:853705‑M2/3‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATAC‑AAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAA  >  NC_000913/3808172‑3808467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.