| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1381497 = | 45 (0.590) | 3 (0.040) | 3/260 | NT | 6.5% | pseudogene (677/957 nt) | ycjV | pseudogene; putative ATP‑binding component of a transport system |
| ? | NC_000913 | 1381555 = | 44 (0.620) | pseudogene (735/957 nt) | ycjV | pseudogene; putative ATP‑binding component of a transport system | |||||
TCAGCAAGCTGCATCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTG > NC_000913/1381350‑1381645 | tcttgcgcgtccggatgaatatcttccggtcgtattcccatcacgatgggcttatgcaaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCcg > 2:911169‑M1/148‑150 (MQ=255)tcttgcgcgtccggatgaatatcttccggtcgtattcccatcacgatgggcttatgcaaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCcg > 1:714578‑M1/148‑150 (MQ=255) cAGCAAGCTGCATCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCcgc > 2:1238133/1‑150 (MQ=255) ttgcgcgtccggatgaatatcttccggtcgtattcccatcacgatgggcttatgcaaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCcgcg > 2:573611‑M1/146‑150 (MQ=255) ttgcgcgtacggctgaatatcttccggtcgtattcccatcacgatgggcttatgcaaactttcctgtgtattcagaaccgctaatttctcttcggtaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCcgcg > 2:578623‑M1/146‑150 (MQ=255) cgcgtccggatgaatatcttccggtcgtattcccatcacgatgggcttatgcaaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAat < 1:765536‑M1/8‑1 (MQ=255) cTGCATCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATAtg < 2:58879/150‑1 (MQ=255) gaaTCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATAtgtt < 1:715004/148‑1 (MQ=255) gCATCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATAtgtt < 2:792817/150‑1 (MQ=255) accaTGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGATTGTTTCCGGATTTATTGGa > 1:765246/1‑150 (MQ=255) caTGATCTACGTGAGCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGTTGCGCCGAAACCCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATc > 2:1108473/1‑150 (MQ=255) caTGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATc < 1:1010847/150‑1 (MQ=255) tGATCTACGTGACCCACGATCCGACCGAAGCTATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCTGGATTTATTGGATCAc < 1:883428/150‑1 (MQ=255) tCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAg < 1:754663/150‑1 (MQ=255) cTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGc < 1:797400/150‑1 (MQ=255) cccACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTAGAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGTATCACCAGCGATGAAtt > 2:16792/1‑150 (MQ=255) cGATCAGACCGAAGCGATGACCTTGGCGACGCGGATTGTGATTATGAAAGACTTGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCATCACGCGAATATGTTTGTTTCCGTATTTATTTGATCACCAGCGATGAATTTTAt < 2:907073/150‑1 (MQ=255) tCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTcg < 2:333269/150‑1 (MQ=255) cAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACTTGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGTATCACCATCGATGAATTTTATTcgc < 2:85488/150‑1 (MQ=255) tgcaaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTcgcg > 1:377778‑M1/94‑150 (MQ=255) aGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTcgcg > 2:1077679/1‑150 (MQ=255) aGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTcgcg > 1:339508/1‑150 (MQ=255) caaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGc > 2:765536‑M1/92‑150 (MQ=255) aCCGAAGCGATGACCATGGCGACGCGGATTGTGACTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGc < 2:756366/150‑1 (MQ=255) aaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCa > 2:1311236‑M1/91‑150 (MQ=255) aGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCAcgat < 1:900339/150‑1 (MQ=255) cccATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGc < 1:1257012/149‑1 (MQ=255) ccATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGATTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCg < 1:43987/150‑1 (MQ=255) cATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCTAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATTAATTTTATTCGCGGCACGATCGATGGCGa < 2:525789/150‑1 (MQ=255) cgcgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCg < 2:428572/150‑1 (MQ=255) gcgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGt > 1:609110/1‑150 (MQ=255) cgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCGGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGtt > 2:306796/1‑150 (MQ=255) cgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGtt < 1:308281/150‑1 (MQ=255) ggATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTa > 2:1142090/1‑150 (MQ=255) ggATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTa < 1:150408/150‑1 (MQ=255) gATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTAc < 1:379994/150‑1 (MQ=255) tgtgATTATGAACGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGa < 2:100673/150‑1 (MQ=255) tgATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGaaa > 2:1063451/1‑150 (MQ=255) tGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTa > 2:1298657/1‑150 (MQ=255) aaGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAAt < 1:673612/150‑1 (MQ=255) cGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTCTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAAc < 2:322361/150‑1 (MQ=255) ggATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCACCCCGCGAATATGTTTGTTTCCGTATTTATTGGAGCACCAGCGATGAATTTTATTCGCGGCACGCTCGATGGCGATAAATTCGTTACGGAACCTCTTACATTAAACa > 2:826042/1‑150 (MQ=255) ggATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCa > 2:347336/1‑150 (MQ=255) aTTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCAtt < 2:1115706/150‑1 (MQ=255) aGCAAGTTGGTGCGCCGAAACCCGTTTATACCCAACCCGCGTAGATGTTTGTTTCCGGATTTATTGGATCAACAGCGATGAATTTTATTCGCGGCACGATCGATGGCGAGAAATTCGTTACGTACACGCTTAATTTAACCATTCCCGAag > 2:190705/1‑150 (MQ=255) gCAAGTAGGTGCGCCGAAAACCGTTTAAAACCAACGATCTAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGAACGATCGATGGCGATATATTCGTTACGGAAACGCTTAAATTAACCTTTCCCGAaga < 2:493944/150‑1 (MQ=255) aGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGaa > 1:1235390/1‑150 (MQ=255) aGTAGGTGCGCCGAAAACCGTTTATAACCAACCAGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGaa > 1:428011/1‑150 (MQ=255) cGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTc < 2:1079288/150‑1 (MQ=255) aaaCAGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGa < 2:527721/150‑1 (MQ=255) aaCCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGaa < 2:680824/150‑1 (MQ=255) cgattATAACCAACCCGCGAATATGTTTGTTTGAGGATTTATTGGATCAGCAGCGATGACTTTTATTCGCGGCACGTTCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAac < 2:250562/147‑1 (MQ=255) tataACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAg > 2:707497/1‑150 (MQ=255) taACCAACCCGCGATTATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACTATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGa > 1:220727/1‑150 (MQ=255) cccGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGtttt > 2:1152008/1‑149 (MQ=255) cccGAGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTg < 1:1092795/150‑1 (MQ=255) | TCAGCAAGCTGCATCAGAAACTGAACACCACCATGATCTACGTGACCCACGATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTG > NC_000913/1381350‑1381645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |