New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1381497 =	45 (0.590)	3 (0.040)	3/260	NT	6.5%	pseudogene (677/957 nt)	ycjV	pseudogene; putative ATP‑binding component of a transport system
	?	NC_000913	1381555 =	44 (0.620)					pseudogene (735/957 nt)	ycjV	pseudogene; putative ATP‑binding component of a transport system

ACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGA  >  NC_000913/1381406‑1381701                                                                                                                                                      |                                                                                                                                                   caaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGc                                                                                                                                                    >  2:765536‑M1/92‑150 (MQ=255) aCCGAAGCGATGACCATGGCGACGCGGATTGTGACTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGc                                                                                                                                                    <  2:756366/150‑1 (MQ=255)  aaactttcctgtgttttcagaaccgctaatttctcttcgggaatggttaatttaagcgtttccgtaacgaatttatcgccatcgatcgtgCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCa                                                                                                                                                   >  2:1311236‑M1/91‑150 (MQ=255)      aGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCAcgat                                                                                                                                               <  1:900339/150‑1 (MQ=255)             cccATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGc                                                                                                                                        <  1:1257012/149‑1 (MQ=255)              ccATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGATTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCg                                                                                                                                       <  1:43987/150‑1 (MQ=255)               cATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCTAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATTAATTTTATTCGCGGCACGATCGATGGCGa                                                                                                                                      <  2:525789/150‑1 (MQ=255)                       cgcgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCg                                                                                                                              <  2:428572/150‑1 (MQ=255)                        gcgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGt                                                                                                                             >  1:609110/1‑150 (MQ=255)                         cgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCGGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGtt                                                                                                                            >  2:306796/1‑150 (MQ=255)                         cgGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGtt                                                                                                                            <  1:308281/150‑1 (MQ=255)                          ggATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTa                                                                                                                           >  2:1142090/1‑150 (MQ=255)                          ggATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTa                                                                                                                           <  1:150408/150‑1 (MQ=255)                           gATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTAc                                                                                                                          <  1:379994/150‑1 (MQ=255)                              tgtgATTATGAACGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGa                                                                                                                       <  2:100673/150‑1 (MQ=255)                                tgATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGaaa                                                                                                                     >  2:1063451/1‑150 (MQ=255)                                      tGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTa                                                                                                               >  2:1298657/1‑150 (MQ=255)                                         aaGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAAt                                                                                                            <  1:673612/150‑1 (MQ=255)                                             cGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTCTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAAc                                                                                                        <  2:322361/150‑1 (MQ=255)                                               ggATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCACCCCGCGAATATGTTTGTTTCCGTATTTATTGGAGCACCAGCGATGAATTTTATTCGCGGCACGCTCGATGGCGATAAATTCGTTACGGAACCTCTTACATTAAACa                                                                                                      >  2:826042/1‑150 (MQ=255)                                               ggATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCa                                                                                                      >  2:347336/1‑150 (MQ=255)                                                 aTTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCAtt                                                                                                    <  2:1115706/150‑1 (MQ=255)                                                        aGCAAGTTGGTGCGCCGAAACCCGTTTATACCCAACCCGCGTAGATGTTTGTTTCCGGATTTATTGGATCAACAGCGATGAATTTTATTCGCGGCACGATCGATGGCGAGAAATTCGTTACGTACACGCTTAATTTAACCATTCCCGAag                                                                                             >  2:190705/1‑150 (MQ=255)                                                         gCAAGTAGGTGCGCCGAAAACCGTTTAAAACCAACGATCTAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGAACGATCGATGGCGATATATTCGTTACGGAAACGCTTAAATTAACCTTTCCCGAaga                                                                                            <  2:493944/150‑1 (MQ=255)                                                            aGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGaa                                                                                         >  1:1235390/1‑150 (MQ=255)                                                            aGTAGGTGCGCCGAAAACCGTTTATAACCAACCAGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGaa                                                                                         >  1:428011/1‑150 (MQ=255)                                                                       cGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTc                                                                              <  2:1079288/150‑1 (MQ=255)                                                                          aaaCAGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGa                                                                           <  2:527721/150‑1 (MQ=255)                                                                           aaCCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGaa                                                                          <  2:680824/150‑1 (MQ=255)                                                                              cgattATAACCAACCCGCGAATATGTTTGTTTGAGGATTTATTGGATCAGCAGCGATGACTTTTATTCGCGGCACGTTCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAac                                                                       <  2:250562/147‑1 (MQ=255)                                                                                  tataACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAg                                                                   >  2:707497/1‑150 (MQ=255)                                                                                    taACCAACCCGCGATTATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACTATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGa                                                                 >  1:220727/1‑150 (MQ=255)                                                                                          tgccgcgaataaaattcatcgctggtgatccaataaatccggaaacaaacatattcgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGttt                                                           >  2:1311236‑M2/61‑150 (MQ=255)                                                                                           gccgcgaataaaattcatcgctggtgatccaataaatccggaaacaaacatattcgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTg                                                          >  2:765536‑M2/60‑150 (MQ=255)                                                                                           cccGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGtttt                                                          >  2:1152008/1‑149 (MQ=255)                                                                                           cccGAGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTg                                                          <  1:1092795/150‑1 (MQ=255)                                                                                             cgcgaataaaattcatcgctggtgatccaataaatccggaaacaaacatattcgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCa                                                        >  1:377778‑M2/58‑150 (MQ=255)                                                                                                  aaATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAAATCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGc                                                   >  2:282922‑M1/3‑150 (MQ=255)                                                                                                  ATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGc                                                   >  2:298230‑M1/1‑150 (MQ=255)                                                                                                       tttgtttCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCAGGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAATCCCATc                                              >  1:72427/1‑150 (MQ=255)                                                                                                            ttCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAACCACAGGAAAGTTTGCATAAGCCCATCGTGAt                                         >  1:1210108/1‑150 (MQ=255)                                                                                                             tCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATg                                        >  1:1057931/1‑150 (MQ=255)                                                                                                              ccGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATgg                                       >  2:409360/1‑150 (MQ=255)                                                                                                              acGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATgg                                       <  2:339508/149‑1 (MQ=255)                                                                                                                ggATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGa                                     <  1:374072/150‑1 (MQ=255)                                                                                                                 gATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGaa                                    >  2:992437/1‑150 (MQ=255)                                                                                                                     tATTGGATCCCCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACg                                >  2:297930/1‑150 (MQ=255)                                                                                                                     tATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACg                                <  1:373585/150‑1 (MQ=255)                                                                                                                       ttGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGAc                              <  2:1271378/150‑1 (MQ=255)                                                                                                                              aCCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGa                       >  2:461526/1‑150 (MQ=255)                                                                                                                                  gCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATAtt                   <  1:422602/150‑1 (MQ=255)                                                                                                                                   cGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTc                  >  1:355089/1‑150 (MQ=255)                                                                                                                                         aTTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCgg            >  1:965756/1‑150 (MQ=255)                                                                                                                                         aTTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCgg            >  1:942472/1‑150 (MQ=255)                                                                                                                                            ttATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGAcg         >  2:24960/1‑150 (MQ=255)                                                                                                                                              attcgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGAcgcg       <  1:765536‑M2/142‑1 (MQ=255)                                                                                                                                                 cgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCaa    >  2:573611‑M2/6‑150 (MQ=255)                                                                                                                                                 cgcggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTACCGAAGAGAAATTAGCGGTTCTGAATACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCAGCCGTACGCGCaa    >  2:578623‑M2/6‑150 (MQ=255)                                                                                                                                                   cggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAaga  >  1:714578‑M2/4‑150 (MQ=255)                                                                                                                                                   cggCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAaga  >  2:911169‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGCCGAAAACCGTTTATAACCAACCCGCGAATATGTTTGTTTCCGGATTTATTGGATCACCAGCGATGAATTTTATTCGCGGCACGATCGATGGCGATAAATTCGTTACGGAAACGCTTAAATTAACCATTCCCGAAGAGAAATTAGCGGTTCTGAAAACACAGGAAAGTTTGCATAAGCCCATCGTGATGGGAATACGACCGGAAGATATTCATCCGGACGCGCAAGA  >  NC_000913/1381406‑1381701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.