mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 148 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4613390 = | 335 (0.860) | 5 (0.010) | 3/256 | NT | 1.6% | coding (980/1074 nt) | yjjU | putative patatin‑like family phospholipase |
| ? | NC_000913 | 4613449 = | 292 (0.800) | coding (1039/1074 nt) | yjjU | putative patatin‑like family phospholipase | |||||
| * | ? | NC_000913 | 4541922 = | 342 (0.880) | 6 (0.020) | 4/264 | NT | 1.8% | intergenic (+363/‑115) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | NC_000913 | 4541952 = | 327 (0.860) | intergenic (+393/‑85) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | NC_000913 | 4512054 = | 441 (1.130) | 3 (0.010) | 3/252 | NT | 0.76% | coding (361/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913 | 4512149 = | 379 (1.050) | coding (266/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4502147 = | 378 (0.970) | 3 (0.010) | 3/258 | NT | 0.84% | noncoding (1369/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4502181 = | 347 (0.940) | noncoding (1335/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 4484590 = | 540 (1.380) | 4 (0.010) | 4/260 | NT | 0.81% | coding (1362/1512 nt) | pepA | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| ? | NC_000913 | 4484674 = | 461 (1.240) | coding (1278/1512 nt) | pepA | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor | |||||
| * | ? | NC_000913 | 4477260 = | 303 (0.780) | 12 (0.030) | 7/252 | NT | 4.1% | intergenic (+9/+47) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 |
| ? | NC_000913 | 4477291 = | 278 (0.770) | intergenic (+40/+16) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 | |||||
| * | ? | NC_000913 | 4467063 = | 382 (0.980) | 11 (0.030) | 8/264 | NT | 2.9% | coding (184/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | NC_000913 | 4467094 = | 374 (0.990) | coding (153/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | NC_000913 | = 4417460 | 406 (1.040) | 9 (0.020) | 8/258 | NT | 2.2% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 399 (1.080) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | 4341778 = | 381 (0.980) | 5 (0.010) | 4/236 | NT | 1.6% | intergenic (‑150/‑133) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | 4341834 = | 274 (0.810) | intergenic (‑206/‑77) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 4339386 | 448 (1.150) | 4 (0.010) | 4/260 | NT | 0.90% | coding (1136/2268 nt) | adiA | arginine decarboxylase |
| ? | NC_000913 | = 4339406 | 449 (1.200) | coding (1116/2268 nt) | adiA | arginine decarboxylase | |||||