mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 97 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4638146 | 532 (0.930) | 3 (0.010) | 3/256 | NT | 0.57% | intergenic (+26/‑32) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | = 4638170 | 548 (1.040) | intergenic (+50/‑8) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein | |||||
| * | ? | NC_000913 | 4636324 = | 687 (1.200) | 6 (0.010) | 4/264 | NT | 0.93% | coding (318/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636375 = | 620 (1.140) | coding (369/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | 4588799 = | 800 (1.400) | 6 (0.010) | 3/264 | NT | 0.80% | coding (67/957 nt) | yjiA | metal‑binding GTPase |
| ? | NC_000913 | 4588827 = | 720 (1.320) | coding (39/957 nt) | yjiA | metal‑binding GTPase | |||||
| * | ? | NC_000913 | = 4583137 | 469 (0.820) | 3 (0.010) | 3/266 | NT | 0.63% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 498 (0.910) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 4542690 | 437 (0.760) | 9 (0.020) | 7/260 | NT | 2.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 475 (0.890) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 448 (0.780) | 12 (0.020) | 8/260 | NT | 2.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 475 (0.890) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4530882 = | 636 (1.110) | 5 (0.010) | 3/268 | NT | 0.82% | coding (770/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | 4530984 = | 602 (1.090) | coding (668/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | = 4530145 | 524 (0.910) | 4 (0.010) | 3/266 | NT | 0.77% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 534 (0.970) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| * | ? | NC_000913 | 4486252 = | 523 (0.910) | 3 (0.010) | 3/262 | NT | 0.62% | coding (35/1101 nt) | lptF | lipopolysaccharide export ABC permease |
| ? | NC_000913 | 4486291 = | 463 (0.860) | coding (74/1101 nt) | lptF | lipopolysaccharide export ABC permease | |||||
| * | ? | NC_000913 | = 4417460 | 593 (1.030) | 7 (0.010) | 5/264 | NT | 1.2% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 610 (1.120) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||