New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3470277 =	NA (NA)	7 (0.070)	6/264	NT	NA	coding (1053/1185 nt)	tufA	translation elongation factor EF‑Tu 1
	?	NC_000913	3470311 =	NA (NA)					coding (1019/1185 nt)	tufA	translation elongation factor EF‑Tu 1

AACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGA  >  NC_000913/3470128‑3470416                                                                                                                                                      |                                                                                                                                            aaCTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCAtt                                                                                                                                             <  2:1803201/150‑1 (MQ=255) aaCTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCAtt                                                                                                                                             <  1:1498871/150‑1 (MQ=255)   cTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTAc                                                                                                                                           <  2:1231263/150‑1 (MQ=255)     aaTTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCTCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCa                                                                                                                                         <  2:999312/150‑1 (MQ=255)     aaTTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCa                                                                                                                                         <  2:54264/150‑1 (MQ=255)         aaCGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCA‑TACCATctct                                                                                                                                    <  2:1017643/150‑1 (MQ=255)         aaCGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATAGGGTGGATCAGGGTAACAACCAGTTTGATGTTGTCGCCCGGCATTACCAtctc                                                                                                                                     >  1:1388500/1‑150 (MQ=255)          aCGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATctct                                                                                                                                    <  2:1590897/150‑1 (MQ=255)          aCGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATctct                                                                                                                                    >  1:474924/1‑150 (MQ=255)           cGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTACCAACCATTTTGATGTTGTCGCCCGGCATTACCAGCtata                                                                                                                                   >  1:1162139/1‑150 (MQ=255)            gtgtAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTAc                                                                                                                                  >  2:1689546/1‑150 (MQ=40)             tgtAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACg                                                                                                                                 >  1:849131/1‑150 (MQ=39)             ggtAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACg                                                                                                                                 <  2:1681674/149‑1 (MQ=38)               tAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGcc                                                                                                                               <  1:177658/150‑1 (MQ=38)               tAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGcc                                                                                                                               <  1:164552/150‑1 (MQ=38)                   tAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCTGCATTACCATCTCTACGCCTTcc                                                                                                                           >  1:232198/1‑150 (MQ=37)                       ccAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGcc                                                                                                                       >  1:1083851/1‑149 (MQ=25)                       ccAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCa                                                                                                                       >  1:1478441/1‑150 (MQ=35)                             cTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCGCTACGCCTTCCGGCAGTTCGa                                                                                                                 >  2:1627773/1‑150 (MQ=21)                               ttAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATg                                                                                                               <  1:734239/150‑1 (MQ=34)                               ttAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATg                                                                                                               <  1:453170/150‑1 (MQ=34)                                tAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATAGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATgg                                                                                                              <  2:1701754/150‑1 (MQ=18)                                 aGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGt                                                                                                             >  2:31121/1‑150 (MQ=32)                                  gCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCTCGATCGGGTGGATCAGGGTTACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTAAGGCAGTTCGATGGTa                                                                                                            >  2:1210183/1‑150 (MQ=255)                                  gCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTa                                                                                                            >  1:1541003/1‑150 (MQ=32)                                   caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTACCAACCATTTTGAGGTTGTCGCCCGGCATTACCCTCTCTTCGCCTTCCGGCAGTTCGATGGTAc                                                                                                           >  2:694633/1‑150 (MQ=9)                                   caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACACCCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTGGGATGGTAc                                                                                                           >  1:1731491/1‑150 (MQ=9)                                   caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATATCTACGCCTTCCGGCAGTTCGATGGTAc                                                                                                           >  2:396026/1‑150 (MQ=14)                                   caacaaCGCCCGCGACAACGCTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGACCATCGCGAGCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAc                                                                                                           <  2:1151277/150‑1 (MQ=9)                                    aaccacGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGTCCGTCGTCCATCGCGATCGTGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAcc                                                                                                          <  1:329486/150‑1 (MQ=2)                                    aacaaaGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGTGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAcc                                                                                                          <  2:948928/150‑1 (MQ=11)                                                                                                                                        ttttCGCCAGGCATTACCATCTCTACGCATTCAGGCAGTTAGATGGTACAAGTCACTTCAGTAGTACGGAAGTAGAACTGAGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGAt      <  1:1234952/147‑1 (MQ=1)                                                                                                                                            cgacctgCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCTGAATGTAGACTTTGAAGAAGCGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGa  <  1:107243/144‑1 (MQ=1)                                                                                                                                                      |                                                                                                                                            AACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGA  >  NC_000913/3470128‑3470416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.