New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3470277 =	NA (NA)	7 (0.070)	6/264	NT	NA	coding (1053/1185 nt)	tufA	translation elongation factor EF‑Tu 1
	?	NC_000913	3470311 =	NA (NA)					coding (1019/1185 nt)	tufA	translation elongation factor EF‑Tu 1

CAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGA  >  NC_000913/3470162‑3470416                                                                                                                                                      |                                                                                                          caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTACCAACCATTTTGAGGTTGTCGCCCGGCATTACCCTCTCTTCGCCTTCCGGCAGTTCGATGGTAc                                                                                                           >  2:694633/1‑150 (MQ=9) caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACACCCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTGGGATGGTAc                                                                                                           >  1:1731491/1‑150 (MQ=9) caacaaCGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATATCTACGCCTTCCGGCAGTTCGATGGTAc                                                                                                           >  2:396026/1‑150 (MQ=14) caacaaCGCCCGCGACAACGCTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGACCATCGCGAGCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAc                                                                                                           <  2:1151277/150‑1 (MQ=9)  aaccacGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGTCCGTCGTCCATCGCGATCGTGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAcc                                                                                                          <  1:329486/150‑1 (MQ=2)  aacaaaGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGTGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAcc                                                                                                          <  2:948928/150‑1 (MQ=11)                                                                                                      ttttCGCCAGGCATTACCATCTCTACGCATTCAGGCAGTTAGATGGTACAAGTCACTTCAGTAGTACGGAAGTAGAACTGAGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGAt      <  1:1234952/147‑1 (MQ=1)                                                                                                          cgacctgCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCTGAATGTAGACTTTGAAGAAGCGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGa  <  1:107243/144‑1 (MQ=1)                                                                                                                                                      |                                                                                                          CAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGA  >  NC_000913/3470162‑3470416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.