mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 144 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633254 | NA (NA) | 7 (0.010) | 6/266 | NT | 1.2% | coding (492/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| ? | NC_000913 | = 4633303 | 590 (1.110) | coding (443/513 nt) | yjjX | non‑canonical purine NTP phosphatase, ITPase/XTPase | |||||
| * | ? | NC_000913 | = 4632014 | 676 (1.230) | 3 (0.010) | 3/258 | NT | 0.46% | coding (1282/1938 nt) | slt | lytic murein transglycosylase, soluble |
| ? | NC_000913 | = 4632070 | 667 (1.300) | coding (1338/1938 nt) | slt | lytic murein transglycosylase, soluble | |||||
| * | ? | NC_000913 | = 4583137 | 559 (1.020) | 14 (0.030) | 9/264 | NT | 2.4% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 613 (1.170) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4558302 = | 584 (1.060) | 3 (0.010) | 3/252 | NT | 0.61% | intergenic (‑13/+52) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | NC_000913 | 4558349 = | 446 (0.890) | intergenic (‑60/+5) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | 4546374 = | 551 (1.000) | 5 (0.010) | 3/260 | NT | 1.0% | coding (1279/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | 4546446 = | 462 (0.890) | coding (1351/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | = 4534139 | 551 (1.000) | 14 (0.030) | 7/256 | NT | 2.6% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 523 (1.030) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4516891 = | 649 (1.180) | 5 (0.010) | 3/258 | NT | 0.84% | coding (827/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4516925 = | 576 (1.120) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | 4485862 = | 553 (1.010) | 4 (0.010) | 3/260 | NT | 0.79% | coding (90/1512 nt) | pepA | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| ? | NC_000913 | 4485924 = | 489 (0.950) | coding (28/1512 nt) | pepA | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor | |||||
| * | ? | NC_000913 | = 4413755 | 595 (1.080) | 4 (0.010) | 4/262 | NT | 0.67% | coding (728/1164 nt) | yjfC | ATP‑Grasp family ATPase |
| ? | NC_000913 | = 4413792 | 618 (1.190) | coding (765/1164 nt) | yjfC | ATP‑Grasp family ATPase | |||||
| * | ? | NC_000913 | 4295801 = | NA (NA) | 33 (0.060) +GTGTGAAT |
7/260 | NT | 4.4% | intergenic (+7/+635) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | 4296061 = | 764 (1.390) | noncoding (227/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||