mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.5% | 53.6 / 134.1 | 122 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 455 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 508683 = | 99 (0.830) | 5 (0.070) +65 bp |
4/168 | 8.6 | 6.0% | noncoding (102/236 nt) | REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913 | 4053426 = | 179 (1.500) | intergenic (+8/+221) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein | |||||
| * | ? | NC_000913 | = 1207805 | 78 (0.660) | 9 (0.080) | 8/266 | 9.4 | 11.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 71 (0.670) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4213168 = | 157 (1.320) | 11 (0.100) | 8/276 | 9.7 | 6.9% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213199 = | 153 (1.390) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 11 (0.100) | 8/284 | 9.8 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4366839 = | 164 (1.380) | 9 (0.080) | 7/268 | 9.9 | 5.6% | intergenic (‑66/+52) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| ? | NC_000913 | 4366871 = | 157 (1.470) | intergenic (‑98/+20) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase | |||||
| * | ? | NC_000913 | 3635910 = | 148 (1.240) | 11 (0.100) | 7/274 | 10.1 | 7.5% | intergenic (+17/+298) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | 3635946 = | 136 (1.240) | intergenic (+53/+262) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 14 (0.130) | 7/280 | 10.2 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3766962 | 166 (1.390) | 8 (0.070) | 7/284 | 10.3 | 4.7% | coding (626/843 nt) | yibA | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein |
| ? | NC_000913 | = 3766977 | 163 (1.440) | coding (641/843 nt) | yibA | putative immunity protein for polymorphic toxin RhsA; HEAT‑domain protein; lethality reduction protein | |||||
| * | ? | NC_000913 | = 2730312 | NA (NA) | 9 (0.080) | 7/284 | 10.3 | NA | noncoding (846/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2730346 | NA (NA) | noncoding (812/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 224582 = | NA (NA) | 9 (0.080) | 7/284 | 10.3 | 100% | noncoding (812/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224616 = | 0 (0.000) | noncoding (846/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||