| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 3,190,486 | IS5 (+) +4 bp | 24.1% | coding (606‑609/750 nt) | yqiH → | putative fimbrial chaperone YqiH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 6 (0.140) | 6/264 | NT | 20.9% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3190486 = | 22 (0.540) | coding (606/750 nt) | yqiH | putative fimbrial chaperone YqiH | |||||
| * | ? | NC_000913 | 3130146 = | NA (NA) | 8 (0.190) | 8/262 | NT | 26.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3190489 | 22 (0.540) | coding (609/750 nt) | yqiH | putative fimbrial chaperone YqiH | |||||
CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3130288‑3130146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCGTCATTTCTACGAATGATTTCAACT < NC_000913/3190489‑3190348 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAGGTTCATTACTCATGCTGAACCCTGTTCTATGGCTCCAGATACCAACGATGATCTCATATCAGGGACTTGTTGGCGCCTTCC > 1:346219/1‑143 AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCc > 2:207028/1‑142 AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCA > 1:787552/1‑143 AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATCGCTCCAGCTGACACCCATGCTCTCATCCCAGCGCCTCGTTCGCCCCTTCCct > 1:6334/1‑141 TTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAA > 1:118295/1‑143 GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAGCTAAAAGAGGATACCATTAAGCTTTGCGTTTGTGGTAACATAGTTACCCCATTTGTTCCGATAT > 2:352512/1‑143 TGATGAACCCTGTTCTATGGCTCGCGCCAATTAACATGACCTCCTGTCAGTGGCTTGTTCGCACCTTCTATAGCTTAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCA < 2:488772/143‑1 GTTCTATGGCTCCAGATGACAAACGTGTGCGCATATCAGGGACTTGTTCGCACCTTCCATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGc > 2:500855/1‑142 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCT < 1:702785/143‑1 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAGCCCAGCGTGACGTGAGAAGGCATCTTATTGTT > 2:815244/1‑143 CTTGTTCGCACCTTCCATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCGTCATTTCTA < 2:118295/143‑1 TTGGTCGCACCTTCCATATCTAAAAGGCGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCGTCATTTCTAC < 1:516780/143‑1 CATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTAGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCGTCATTTCTACGAATGATTTCAACT > 1:694015/1‑143 CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3130288‑3130146‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATAGCTAAAAGGGGTTACCATTAAGCTTTGCGTTTGTGGTAACATCGTTACCCCATTTGTTCCGATATAACCCAGCGTAACGTGATAAGGCATCTTATTGTTAAAGCGGATCGAACCGTCATTTCTACGAATGATTTCAACT < NC_000913/3190489‑3190348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |