New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	42783 =	24 (0.570)	3 (0.080)	3/250	NT	12.1%	coding (381/771 nt)	fixA	putative electron transfer flavoprotein FixA
	?	NC_000913	42803 =	21 (0.530)					coding (401/771 nt)	fixA	putative electron transfer flavoprotein FixA

GCCCGGATGAACTGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTG  >  NC_000913/42641‑42924                                                                                                                                               |                                                                                                                                              gCCCGGATGAACTGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCATTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGcc                                                                                                                                               <  1:783015/143‑1 (MQ=255)  cccGGATGAACTGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGccc                                                                                                                                              >  2:312320/1‑143 (MQ=255)  cccGGATGAACTGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGccc                                                                                                                                              >  2:736545/1‑143 (MQ=255)   aacagcaacaaccgcgggcagcggaatgctgaaggtttcggtttcatcttccagttttcgctcaacggtgagggtatctgacgtcagggagataatcttgctgacgccgttaactgccggaatattgaggatttcgcccacca                                                                                                                                             >  2:758545‑M1/141‑143 (MQ=255)           aCTGATTGTGGTGATTGAGGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTg                                                                                                                                     <  2:573346/143‑1 (MQ=255)           aCTGATGGTGGTGATTGATCACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTg                                                                                                                                     <  2:349167/143‑1 (MQ=255)             tGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGt                                                                                                                                   <  1:786819/143‑1 (MQ=255)                     gggattgagGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCtggt                                                                                                                           <  1:131232/141‑1 (MQ=255)                      agcggaatgcttaaggtttcggtttcatcttccagttcgcgctcaacggtgagggtatctgccgtcagggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtg                                                                                                                          >  2:483593‑M1/122‑143 (MQ=255)                       gattgatGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGACCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCCTTATGCCCCGGAGGTTGGTCTGCtggcgg                                                                                                                         >  1:29363/1‑143 (MQ=255)                                       gAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGAGGGTTTTTTCGACCGTGATGCCGAGCAGGGCGGTCTGCCGGTGGGCTGCATCCTCAataa                                                                                                         >  1:70100/1‑142 (MQ=255)                                         ggaggagcTGCGGCAACAGACGGCGGGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCGTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGGTGGTCTGCTGGTGGGCGAAATCCTCAATATTc                                                                                                       <  2:436180/136‑1 (MQ=255)                                              cACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAACGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCCCACGATCCGTCTGCTGGTGGGCGCAATCCTCCATATTCCGGCa                                                                                                  >  2:169350/1‑143 (MQ=255)                                              cACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCGCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCa                                                                                                  <  1:209351/143‑1 (MQ=255)                                                          aaaCGGTGAGCGCCCTGTCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTc                                                                                      <  2:550793/143‑1 (MQ=255)                                                                        cTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTAtctc                                                                        >  2:140408/1‑143 (MQ=255)                                                                           gCTGCAGCGGCCCAGAAAGCAGGCTTTGATACGCGGCTCTGGTGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCt                                                                     <  2:359938/143‑1 (MQ=255)                                                                           gCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGGTGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATCTTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCt                                                                     >  1:172879/1‑143 (MQ=255)                                                                             tGCAGCCGCCCAGAAAGCAGGCTTTGATCTGACCCTCTGTGGCGGTTCTGCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGa                                                                   <  2:800427/143‑1 (MQ=255)                                                                               cAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTATGCACCATGCCGAACTCCCCGCTACTCCGCCAGTTAACGGCGGCAGCAAAATTATCTCACTGACg                                                                 >  1:734601/1‑143 (MQ=255)                                                                                     cccAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGAt                                                           >  1:271103/1‑143 (MQ=255)                                                                                       cAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGAGGGCAGATAc                                                         >  2:37172/1‑143 (MQ=255)                                                                                          ggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtgg                                                                                                                         >  1:710988‑M1/54‑76 (MQ=255)                                                                                          ggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtgg                                                                                                                         <  2:710988‑M1/23‑1 (MQ=255)                                                                                                  cTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTg                                              >  2:459952/1‑143 (MQ=255)                                                                                                           gatcCTCTGTGGCGGTGGCTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAAc                                     <  2:750395/143‑1 (MQ=255)                                                                                                                tcggtgGCGATGGTGCGTCCGAGCTTGATGCCCAGCAGGTTGGTCTGCGGGTGGGCGAAATCCTCGAGACTCCGGCAGTTAACGGCGTCAGCAAAATTAGCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGaa                                <  2:774938/140‑1 (MQ=255)                                                                                                                  tgtgGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGa                              <  1:736545/143‑1 (MQ=255)                                                                                                                  tgtgGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGa                              <  1:312320/143‑1 (MQ=255)                                                                                                                                 tcCGACCTTTATGCCCAGCATGTCTGTCTGCTGGTGGGCGAAAGCCGCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTAGCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCtt               <  1:162588/143‑1 (MQ=255)                                                                                                                                   cGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGCTGAAACCGGAACCTTaa             >  1:425572/1‑143 (MQ=255)                                                                                                                                             gCCCCGCAGGTTGGTCTGCTGGTGTGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGct   <  1:237945/143‑1 (MQ=255)                                                                                                                                              cccAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAAGCGACACCTCAAGCATTCCGctg  >  2:390106/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              GCCCGGATGAACTGATTGTGGTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTG  >  NC_000913/42641‑42924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.