New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	42783 =	24 (0.570)	3 (0.080)	3/250	NT	12.1%	coding (381/771 nt)	fixA	putative electron transfer flavoprotein FixA
	?	NC_000913	42803 =	21 (0.530)					coding (401/771 nt)	fixA	putative electron transfer flavoprotein FixA

GTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTGCCTGCGGTTGTTGCTGTT  >  NC_000913/42661‑42942                                                                                                                                               |                                                                                                                                            gggattgagGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCtggt                                                                                                                                             <  1:131232/141‑1 (MQ=255)  agcggaatgcttaaggtttcggtttcatcttccagttcgcgctcaacggtgagggtatctgccgtcagggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtg                                                                                                                                            >  2:483593‑M1/122‑143 (MQ=255)   gattgatGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGACCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCCTTATGCCCCGGAGGTTGGTCTGCtggcgg                                                                                                                                           >  1:29363/1‑143 (MQ=255)                   gAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGAGGGTTTTTTCGACCGTGATGCCGAGCAGGGCGGTCTGCCGGTGGGCTGCATCCTCAataa                                                                                                                           >  1:70100/1‑142 (MQ=255)                     ggaggagcTGCGGCAACAGACGGCGGGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCGTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGGTGGTCTGCTGGTGGGCGAAATCCTCAATATTc                                                                                                                         <  2:436180/136‑1 (MQ=255)                          cACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAACGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCCCACGATCCGTCTGCTGGTGGGCGCAATCCTCCATATTCCGGCa                                                                                                                    >  2:169350/1‑143 (MQ=255)                          cACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCGCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCa                                                                                                                    <  1:209351/143‑1 (MQ=255)                                      aaaCGGTGAGCGCCCTGTCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTc                                                                                                        <  2:550793/143‑1 (MQ=255)                                                    cTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTAtctc                                                                                          >  2:140408/1‑143 (MQ=255)                                                       gCTGCAGCGGCCCAGAAAGCAGGCTTTGATACGCGGCTCTGGTGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCt                                                                                       <  2:359938/143‑1 (MQ=255)                                                       gCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGGTGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATCTTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCt                                                                                       >  1:172879/1‑143 (MQ=255)                                                         tGCAGCCGCCCAGAAAGCAGGCTTTGATCTGACCCTCTGTGGCGGTTCTGCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGa                                                                                     <  2:800427/143‑1 (MQ=255)                                                           cAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTATGCACCATGCCGAACTCCCCGCTACTCCGCCAGTTAACGGCGGCAGCAAAATTATCTCACTGACg                                                                                   >  1:734601/1‑143 (MQ=255)                                                                 cccAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGAt                                                                             >  1:271103/1‑143 (MQ=255)                                                                   cAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGAGGGCAGATAc                                                                           >  2:37172/1‑143 (MQ=255)                                                                      ggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtgg                                                                                                                                           >  1:710988‑M1/54‑76 (MQ=255)                                                                      ggagataattttgctgacgccgttaactgccggaatattgaggatttcgcccaCCAGCAGGTTGGTCTGCtggtgg                                                                                                                                           <  2:710988‑M1/23‑1 (MQ=255)                                                                              cTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTg                                                                >  2:459952/1‑143 (MQ=255)                                                                                       gatcCTCTGTGGCGGTGGCTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAAc                                                       <  2:750395/143‑1 (MQ=255)                                                                                            tcggtgGCGATGGTGCGTCCGAGCTTGATGCCCAGCAGGTTGGTCTGCGGGTGGGCGAAATCCTCGAGACTCCGGCAGTTAACGGCGTCAGCAAAATTAGCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGaa                                                  <  2:774938/140‑1 (MQ=255)                                                                                              tgtgGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGa                                                <  1:736545/143‑1 (MQ=255)                                                                                              tgtgGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGa                                                <  1:312320/143‑1 (MQ=255)                                                                                                             tcCGACCTTTATGCCCAGCATGTCTGTCTGCTGGTGGGCGAAAGCCGCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTAGCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCtt                                 <  1:162588/143‑1 (MQ=255)                                                                                                               cGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGCTGAAACCGGAACCTTaa                               >  1:425572/1‑143 (MQ=255)                                                                                                                        ccaccagcagaccaacctgctggTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTcc                                                                                         >  1:710988‑M2/24‑76 (MQ=255)                                                                                                                        ccaccagcagaccaacctgctggTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTcc                                                                                         <  2:710988‑M2/53‑1 (MQ=255)                                                                                                                         gCCCCGCAGGTTGGTCTGCTGGTGTGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGct                     <  1:237945/143‑1 (MQ=255)                                                                                                                         caccagcagaccaacctgctggTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGct                     >  2:483593‑M2/23‑143 (MQ=255)                                                                                                                          cccAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAAGCGACACCTCAAGCATTCCGctg                    >  2:390106/1‑143 (MQ=255)                                                                                                                                   ttGGTCTGCTGGTGGGCGAAATCCTCGATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTGCCTGCGgtt           <  2:71938/143‑1 (MQ=255)                                                                                                                                      gTCTGCTGGTGGGCGAAACCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTGCCTGCGgttgtt        <  1:140408/143‑1 (MQ=255)                                                                                                                                            tggTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAGATTATCTCCCTGACGTCAGATACCCTCACCGTTGAGCGAAAACTGGAAGATGAAACCGAAACCTTCAGCATTCCGCTGCCCGCGGTTGTTGCTGtt  >  2:758545‑M2/4‑143 (MQ=255)                                                                                                                                               |                                                                                                                                            GTGATTGATGACCAGTTCGAGCAGGCACTGCCGCAACAAACGGCGAGCGCACTGGCTGCAGCCGCCCAGAAAGCAGGCTTTGATCTGATCCTCTGTGGCGATGGTTCTTCCGACCTTTATGCCCAGCAGGTTGGTCTGCTGGTGGGCGAAATCCTCAATATTCCGGCAGTTAACGGCGTCAGCAAAATTATCTCCCTGACGGCAGATACCCTCACCGTTGAGCGCGAACTGGAAGATGAAACCGAAACCTTAAGCATTCCGCTGCCTGCGGTTGTTGCTGTT  >  NC_000913/42661‑42942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.