| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1097101 | 18 (0.430) | 5 (0.130) | 5/248 | NT | 22.8% | intergenic (+272/+464) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | = 1097105 | NA (NA) | intergenic (+276/+460) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT > NC_000913/1096973‑1097240 | aaTAGACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTACAACTGGCgacagccagttgga < 2:517333‑M1/143‑15 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttg < 1:434221‑M1/134‑13 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttg > 2:434221‑M1/1‑122 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccccc < 2:708666/143‑1 (MQ=32) aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCg < 1:672211/143‑1 (MQ=32) aaaGCCCGTACTTTCGTACGGGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg < 2:104180/143‑1 (MQ=17) aCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGAGGGGGATTGACGCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCa < 1:463204/143‑1 (MQ=17) cTTTCGTACGAGCTCTGCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt < 1:335101/143‑1 (MQ=17) cgttAAATATGGCGGTGAGGGAGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 1:790838/141‑1 (MQ=17) ttAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCCTCCCCCCGGTGTGTGCaacc > 2:475130/1‑141 (MQ=17) aaaTATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca < 2:756545/143‑1 (MQ=33) aaaTATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca < 1:477280/143‑1 (MQ=34) tGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCATGCGGGCAGCCCGCTCAATGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCCTCTCATCCCCCCGGTGTGTGCAACACACGaaa > 1:57507/1‑143 (MQ=255) gcgAGGGGGCGATT‑ACCCGCCTTCGCTCGCCCTGCGGGAACCCCGCTCACGGCGTTCACGGTCTGTCCAACTGGCTTTCCCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCGCCGGTGTGTGCAATACACGaaaaaaag < 2:383559/141‑2 (MQ=11) gTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCCGCCCGCGCAGTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaaa < 1:560936/143‑1 (MQ=255) gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAGACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtctt > 1:165094/1‑143 (MQ=25) ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAACAAAGCCCGTACTTTCCTACGAGCtcttc > 2:351657/1‑143 (MQ=25) gcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttgg < 1:728316‑M1/60‑14 (MQ=255) gcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttgg > 2:728316‑M1/1‑47 (MQ=255) tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATa > 2:470869/1‑99 (MQ=33) aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg > 1:347069/1‑55 (MQ=35) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg > 2:651450/1‑129 (MQ=35) cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaa > 1:512012/1‑80 (MQ=39) aaCTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcactcgcccagtaaccgccatatttaaagaagagcccgtacgcaagtacgggctttgttttcgtatgttgcg > 1:188347‑M1/1‑7 (MQ=255) aaCTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgca > 1:228857‑M1/1‑7 (MQ=255) aaCGGGCgccagccaggtggacagaccgtgagcgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgca < 2:273957‑M1/143‑137 (MQ=255) tGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgag > 2:581332‑M1/1‑4 (MQ=255) tGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgag < 1:581332‑M1/58‑55 (MQ=255) tGGCgacagaaagttggacagactgtggacgcagtgagcgggatgccagcagggcgagcgaagcgagtcaatcctcccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacac < 2:527231‑M1/143‑140 (MQ=255) gCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagt > 2:557188‑M1/1‑2 (MQ=255) gCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagt < 1:557188‑M1/66‑65 (MQ=255) | AATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCG‑CTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCT > NC_000913/1096973‑1097240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |