New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 109710118 (0.430)5 (0.130) 5/248 NT 22.8% intergenic (+272/+464) ycdU/serX uncharacterized protein YcdU/tRNA‑Ser
?NC_000913 = 1097105 NA (NA)intergenic (+276/+460) ycdU/serX uncharacterized protein YcdU/tRNA‑Ser

GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGG  >  NC_000913/1096980‑1097245
                                                                                                                              |                                                                                                                                            
gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccccc                                                                                                                             <  2:708666/143‑1 (MQ=32)
     aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCg                                                                                                                        <  1:672211/143‑1 (MQ=32)
      aaaGCCCGTACTTTCGTACGGGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg                                                                                                                       <  2:104180/143‑1 (MQ=17)
               aCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGAGGGGGATTGACGCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCa                                                                                                              <  1:463204/143‑1 (MQ=17)
                cTTTCGTACGAGCTCTGCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAt                                                                                                             <  1:335101/143‑1 (MQ=17)
                                 cgttAAATATGGCGGTGAGGGAGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa                                                                                            <  1:790838/141‑1 (MQ=17)
                                   ttAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCCTCCCCCCGGTGTGTGCaacc                                                                                          >  2:475130/1‑141 (MQ=17)
                                     aaaTATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca                                                                                        <  1:477280/143‑1 (MQ=34)
                                     aaaTATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATaca                                                                                        <  2:756545/143‑1 (MQ=33)
                                          tGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCATGCGGGCAGCCCGCTCAATGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCCTCTCATCCCCCCGGTGTGTGCAACACACGaaa                                                                                   >  1:57507/1‑143 (MQ=255)
                                               gcgAGGGGGCGATTACCCGCCTTCGCTCGCCCTGCGGGAACCCCGCTCACGGCGTTCACGGTCTGTCCAACTGGCTTTCCCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCGCCGGTGTGTGCAATACACGaaaaaaag                                                                              <  2:383559/141‑2 (MQ=11)
                                               gTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGCCCGCGCAGTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaaa                                                                              <  1:560936/143‑1 (MQ=255)
                                                                        gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAGACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtctt                                                      >  1:165094/1‑143 (MQ=25)
                                                                         ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAACAAAGCCCGTACTTTCCTACGAGCtcttc                                                     >  2:351657/1‑143 (MQ=25)
                                                                                tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATa                                                                                          >  2:470869/1‑99 (MQ=33)
                                                                                                aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg                                                                                                                      >  1:347069/1‑55 (MQ=35)
                                                                                                  tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                          >  2:651450/1‑129 (MQ=35)
                                                                                                              cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaa                                                                               >  1:512012/1‑80 (MQ=39)
                                                                                                                           tGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg   >  1:61868/1‑143 (MQ=35)
                                                                                                                            gTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCggg  <  2:61868/143‑1 (MQ=35)
                                                                                                                              |                                                                                                                                            
GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGG  >  NC_000913/1096980‑1097245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.