New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1579554 =	34 (0.810)	3 (0.080)	3/246	NT	9.0%	coding (10/123 nt)	yneP	protein YneP
	?	NC_000913	1579580 =	29 (0.740)					coding (36/123 nt)	yneP	protein YneP

TCATTTAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTT  >  NC_000913/1579413‑1579692                                                                                                                                              |                                                                                                                                           ttatatgaacgccatggtagagttagctaagaacagagtaccgctttaccacattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCa                                                                                                                                           <  2:725212‑M1/2‑1 (MQ=255)  tatatgaacgccatggtagagttagctaagaacagagtaccgctttaccacattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCAc                                                                                                                                          >  1:332916‑M1/141‑143 (MQ=255)   atatgaacgccatggtagagttagctaagaacagagtaccgctttaccacattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattattagcctccttcttatgaccttaacaaggCaca                                                                                                                                         <  2:345994‑M1/4‑2 (MQ=255)   aTTTAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACAcc                                                                                                                                         <  1:693477/143‑1 (MQ=255)     atgaacgccatggtagagttagctaagaacagagtaccgctttaccacattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCg                                                                                                                                       <  1:743909‑M1/6‑1 (MQ=255)        aCAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACa                                                                                                                                    >  1:725212/1‑143 (MQ=255)           atatGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGa                                                                                                                                 <  1:59015/143‑1 (MQ=255)           atatGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGa                                                                                                                                 <  1:63251/143‑1 (MQ=255)                 aaTATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTAt                                                                                                                           <  1:647249/143‑1 (MQ=255)                   tataAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGt                                                                                                                         >  2:743909/1‑143 (MQ=255)                        aGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGt                                                                                                                    >  2:401068/1‑143 (MQ=255)                             tatTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCtt                                                                                                               <  1:133372/143‑1 (MQ=255)                               tttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGt                                                                                                             >  1:208489/1‑143 (MQ=255)                                ttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCCAGGTTATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGtt                                                                                                            >  2:270773/1‑143 (MQ=255)                                ttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTCAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATGTATGTCGGGTGCCTGGtt                                                                                                            >  2:396580/1‑143 (MQ=255)                                    ttttCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAgg                                                                                                        >  1:588736/1‑143 (MQ=255)                                                atggttatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAagga                                                                                            <  1:482906/143‑1 (MQ=255)                                                acctcattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAagga                                                                                            >  1:624158‑M1/95‑143 (MQ=255)                                                        gCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGCAATGTATGTCGGGTGCCTTCTGCAGGTCATAAGAAGGAGGCTAAGa                                                                                    >  1:734202/1‑143 (MQ=255)                                                           aTTGATAATCAAGGATATTGCTAATGCCCGGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATg                                                                                 <  2:437721/143‑1 (MQ=255)                                                             tgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGa                                                                               <  1:272365‑M1/62‑1 (MQ=255)                                                             tGATAAGCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGa                                                                               <  1:622676/143‑1 (MQ=255)                                                              gttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAg                                                                              >  2:272365‑M1/81‑143 (MQ=255)                                                                    cAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTaaaa                                                                        >  2:214591/1‑143 (MQ=255)                                                                     aaGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAag                                                                       >  2:40820/1‑143 (MQ=255)                                                                            ttGGTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACCAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGt                                                                <  1:412707/143‑1 (MQ=255)                                                                            ttGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGCTAAAAGAGAGCGt                                                                >  2:260650/1‑143 (MQ=255)                                                                                    gCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaatt                                                        >  1:127323/1‑143 (MQ=255)                                                                                     cccTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGttattacata                                                       >  2:111568/1‑139 (MQ=255)                                                                                     cccTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaatta                                                       <  1:710810/143‑1 (MQ=255)                                                                                      ccagATGCATACCACGTAAACCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAACTTTAATGattat                                                      >  2:631381/4‑143 (MQ=255)                                                                                                   gcGTAAGCCACGATCTTCCCAAGGGAAGCCGCGGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGttt                                         <  1:686244/142‑1 (MQ=255)                                                                                                    cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTTGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGtttt                                        <  2:667298/143‑1 (MQ=255)                                                                                                    cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGtttt                                        <  2:145280/143‑1 (MQ=255)                                                                                                           cAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTCTGTCGGGTGCCTTGTTAAGGTGATAAGAAGGAGGCTAAGAATGGAGGTCAAAGAGCGCGCTATTAATTATTCGACATTTGCTTTGCAGCAt                                 >  2:309784/1‑143 (MQ=255)                                                                                                           cAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGGTATTAATTATTCTCCATTTGTTTTGCAACAt                                 >  2:341507/1‑143 (MQ=255)                                                                                                              gATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCa                              >  2:55824/1‑143 (MQ=255)                                                                                                                ttttCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATa                            <  2:215543/143‑1 (MQ=255)                                                                                                                 tttCGCAAGGGAAGATGATGATGACTAAACACCCGATAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATaa                           <  1:448364/143‑1 (MQ=255)                                                                                                                               acgaggatgaCGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGt             <  2:118865/138‑1 (MQ=255)                                                                                                                                     atgaCGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTGATTAATTATTCTCCATTTGTTTTGCTCCATCCAAAATGTGGTAAAGCGGTACTCTg       >  2:427178/1‑143 (MQ=255)                                                                                                                                       gaCGAAACACCCGACAGGAATTTGTGTGGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGtt     <  2:640393/143‑1 (MQ=255)                                                                                                                                          gAAATACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCtt  <  2:429872/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                           TCATTTAACAATATGAAATATAAAGGAATATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTT  >  NC_000913/1579413‑1579692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.