New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1579554 =	34 (0.810)	3 (0.080)	3/246	NT	9.0%	coding (10/123 nt)	yneP	protein YneP
	?	NC_000913	1579580 =	29 (0.740)					coding (36/123 nt)	yneP	protein YneP

TATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCATATAA  >  NC_000913/1579441‑1579720                                                                                                                                            |                                                                                                                                             tatTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCtt                                                                                                                                           <  1:133372/143‑1 (MQ=255)   tttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGt                                                                                                                                         >  1:208489/1‑143 (MQ=255)    ttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCCAGGTTATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGtt                                                                                                                                        >  2:270773/1‑143 (MQ=255)    ttCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTCAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATGTATGTCGGGTGCCTGGtt                                                                                                                                        >  2:396580/1‑143 (MQ=255)        ttttCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAgg                                                                                                                                    >  1:588736/1‑143 (MQ=255)                    atggttatgCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAagga                                                                                                                        <  1:482906/143‑1 (MQ=255)                    acctcattatggatgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAagga                                                                                                                        >  1:624158‑M1/95‑143 (MQ=255)                            gCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGCAATGTATGTCGGGTGCCTTCTGCAGGTCATAAGAAGGAGGCTAAGa                                                                                                                >  1:734202/1‑143 (MQ=255)                               aTTGATAATCAAGGATATTGCTAATGCCCGGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATg                                                                                                             <  2:437721/143‑1 (MQ=255)                                 tgttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGa                                                                                                           <  1:272365‑M1/62‑1 (MQ=255)                                 tGATAAGCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGa                                                                                                           <  1:622676/143‑1 (MQ=255)                                  gttgcaaaacaaatggagaataattaataacgctctcttttaactccattcttagcctccttcttatgaccttaacaaggCACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAg                                                                                                          >  2:272365‑M1/81‑143 (MQ=255)                                        cAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTaaaa                                                                                                    >  2:214591/1‑143 (MQ=255)                                         aaGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAag                                                                                                   >  2:40820/1‑143 (MQ=255)                                                ttGGTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACCAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGt                                                                                            <  1:412707/143‑1 (MQ=255)                                                ttGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGCTAAAAGAGAGCGt                                                                                            >  2:260650/1‑143 (MQ=255)                                                        gCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaatt                                                                                    >  1:127323/1‑143 (MQ=255)                                                         cccTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGttattacata                                                                                   >  2:111568/1‑139 (MQ=255)                                                         cccTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTattaatta                                                                                   <  1:710810/143‑1 (MQ=255)                                                          ccagATGCATACCACGTAAACCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAACTTTAATGattat                                                                                  >  2:631381/4‑143 (MQ=255)                                                                       gcGTAAGCCACGATCTTCCCAAGGGAAGCCGCGGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGttt                                                                     <  1:686244/142‑1 (MQ=255)                                                                        cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTTGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGtttt                                                                    <  2:667298/143‑1 (MQ=255)                                                                        cGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGtttt                                                                    <  2:145280/143‑1 (MQ=255)                                                                             ctccattcttagcctccttcttatgaccttaacaaggcacccgacataaattcctgtcgggtgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAAc                                                               >  2:272365‑M2/64‑143 (MQ=255)                                                                              tccattcttagcctccttcttatgaccttaacaaggcacccgacataaattcctgtcgggtgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACa                                                              <  1:272365‑M2/81‑1 (MQ=255)                                                                               cAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTCTGTCGGGTGCCTTGTTAAGGTGATAAGAAGGAGGCTAAGAATGGAGGTCAAAGAGCGCGCTATTAATTATTCGACATTTGCTTTGCAGCAt                                                             >  2:309784/1‑143 (MQ=255)                                                                               cAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGGTATTAATTATTCTCCATTTGTTTTGCAACAt                                                             >  2:341507/1‑143 (MQ=255)                                                                                  gATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCa                                                          >  2:55824/1‑143 (MQ=255)                                                                                    ttttCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATa                                                        <  2:215543/143‑1 (MQ=255)                                                                                     tttCGCAAGGGAAGATGATGATGACTAAACACCCGATAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATaa                                                       <  1:448364/143‑1 (MQ=255)                                                                                           tccttcttatgaccttaacaaggcacccgacataaattcctgtcgggtgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGAGGt                                                 >  1:624158‑M2/50‑143 (MQ=255)                                                                                                   acgaggatgaCGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGt                                         <  2:118865/138‑1 (MQ=255)                                                                                                         atgaCGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTGATTAATTATTCTCCATTTGTTTTGCTCCATCCAAAATGTGGTAAAGCGGTACTCTg                                   >  2:427178/1‑143 (MQ=255)                                                                                                           gaCGAAACACCCGACAGGAATTTGTGTGGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGtt                                 <  2:640393/143‑1 (MQ=255)                                                                                                              gAAATACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCtt                              <  2:429872/143‑1 (MQ=255)                                                                                                                       GACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAActc                     >  1:390874‑M1/1‑143 (MQ=255)                                                                                                                            gAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTACTTCTTCTCCATTTGACACCCAATAGCCAGAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTAccc                >  2:173200/1‑142 (MQ=255)                                                                                                                               tttATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATgg             >  1:575737/1‑143 (MQ=255)                                                                                                                                      cgggtgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCat      <  1:743909‑M2/137‑1 (MQ=255)                                                                                                                                        tgtgCCTTGTTAAGGTCATAAGAAGGAGGCTAATAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCatat    <  2:345994‑M2/139‑1 (MQ=255)                                                                                                                                         gtgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCAtata   >  1:332916‑M2/4‑143 (MQ=255)                                                                                                                                          tgCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCATATaa  <  2:725212‑M2/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             TATTTCATTTTCAGTGGTTATGGTTATGCTATTGATAATCAAGGATATTGCTAATGCCCTGATGCATACCACGTAAGCCAGGATTTTCGCAAGGGAAGATGATGATGACGAAACACCCGACAGGAATTTATGTCGGGTGCCTTGTTAAGGTCATAAGAAGGAGGCTAAGAATGGAGTTAAAAGAGAGCGTTATTAATTATTCTCCATTTGTTTTGCAACATCCATAATGTGGTAAAGCGGTACTCTGTTCTTAGCTAACTCTACCATGGCGTTCATATAA  >  NC_000913/1579441‑1579720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.