New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2411407	36 (0.850)	3 (0.080)	3/250	NT	8.0%	intergenic (‑55/+32)	yfbS/hxpA	putative transporter YfbS/hexitol phosphatase A
	?	NC_000913	= 2411413	35 (0.880)					intergenic (‑61/+26)	yfbS/hxpA	putative transporter YfbS/hexitol phosphatase A

GACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAA  >  NC_000913/2411266‑2411548                                                                                                                                              |                                                                                                                                              gACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTATGCCATAAAAAAGCCCcga                                                                                                                                              >  2:256310/1‑143 (MQ=255)    cGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgacga                                                                                                                                           >  1:546726/1‑143 (MQ=255)    cGCATCCATACGCACTCTGCCCGGCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTGCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCcgacga                                                                                                                                           <  2:223055/143‑1 (MQ=255)      cATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCTCAACTTATCCTTGTTAATTGAGGGGGATGACTGGTGTCTGCCATAAAAAAGCCCCGACgcga                                                                                                                                         >  1:415324/1‑143 (MQ=255)           aTACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcgggg                                                                                                                                    >  2:766587‑M2/1‑138 (MQ=255)             acgcacgcTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcggggct                                                                                                                                  >  2:660565‑M2/1‑136 (MQ=255)              cGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGtctcgtcggggctt                                                                                                                                 <  1:36235‑M1/143‑15 (MQ=255)                 aCTGTGCCGGGCGCGAACAATACGATGGCAGCGGCCAGTAATGAAAGAACCCAAATCGGTGCACCGTTCACAACTTCTCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGTGCTAAAt                                                                                                                              <  2:567177/143‑1 (MQ=255)                  gtcggCCCGGCGCAAACAGGGCGATGGCAACGGCCAGGAATGAAAGAACCCAAATCGATTCACCGTTCACAACTTATCCGTGTTAATTGAGGGGGAGGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCCAAATc                                                                                                                             <  2:374030/139‑1 (MQ=255)                  ctctGCCCGGCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATc                                                                                                                             <  2:58865/143‑1 (MQ=255)                            cGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGGTTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGgt                                                                                                                   <  2:2663/143‑1 (MQ=255)                             gCAAACGAGTCGATGGCAACGGCCAGTAATGAAAGAACCCAAGTCAATTCACCGTTCACAATTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGtctcgtcggggcttttttatggcagaatc                                                                                                                  <  1:321350‑M1/143‑30 (MQ=255)                                  cAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACCTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGtctcgtcggggcttttttatggcagaatcaagtc                                                                                                             <  1:73509‑M1/143‑35 (MQ=255)                                    aGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACt                                                                                                           >  1:739386/1‑143 (MQ=255)                                          gggaaaCGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAACAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGaataa                                                                                                     <  1:257612/139‑1 (MQ=255)                                              aaCGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAAc                                                                                                 >  2:564285/1‑143 (MQ=255)                                                 taccAGTAATGAAAAGAGCCAACTCGATTGACCTTTCACAACGTATCGTTGTTAATTGAGTGCTATGACTTGATTCTGCCATAAAAAATCCGCGACTAGACGGGGCTAAATCATGATCATGTGTTTCACTGAATAATAACATc                                                                                              <  2:639903/141‑1 (MQ=255)                                                          tcaaaGACCCCACATCAATTCACCGTTCACAACTTATCCTTGTCAATCGAGGGGGATGACGTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTgg                                                                                     <  1:44249/141‑1 (MQ=255)                                                            ggaGAACCCATACCAGTGCACCGTTTACTACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATACAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCt                                                                                   <  2:197784/141‑1 (MQ=255)                                                             aaGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCCCCActtacctg                                                                                  >  2:821160/1‑138 (MQ=255)                                                                   ccAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAATAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATCACATCACCACTTAGCTGTTCGGt                                                                            >  2:256383/1‑143 (MQ=255)                                                                     aaaTCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGAGAATGGCGGTATTCTGCCATAAAAAAGCAACGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACGCACTAATAACGTCGCCATTTGCATCGTTGGTca                                                                          >  2:176153/1‑143 (MQ=255)                                                                       aTCAAGTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAATAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTcaca                                                                        <  1:413987/143‑1 (MQ=255)                                                                        tCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCGCGACGGGACGGGGCTAAATCATGGTATGGCGCGAAACCAAACAATCACGTACCAATTTGGCGGTTTGGTCACAg                                                                       >  1:183678/1‑143 (MQ=255)                                                                        tCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAg                                                                       <  1:74516/143‑1 (MQ=255)                                                                              cACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATCCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAAttt                                                                 <  1:775487/143‑1 (MQ=255)                                                                                  gTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTc                                                             <  1:140684/143‑1 (MQ=255)                                                                                    gcacaACCTATCCTTGTTAATTGAGTGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCa                                                           <  2:239591/142‑1 (MQ=255)                                                                                      acaTCTGATCCGTGTTAGTTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGa                                                         <  2:824965/143‑1 (MQ=255)                                                                                      acaACTTATCCTTGTTAATTGAGGGGGCTGACTTGATTCTGCAATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGa                                                         >  1:176063/1‑143 (MQ=255)                                                                                       caACTTATCCTTGTTAATTGAGGCGGATGACTTGATTCTGCCATAAAAACGCCCCGACGAGACGGGGCTAAATCACGATCAGCTGTTTCACTGAATAATAACCTCGCCATTTCGCTGCTTGGTCACAGCACTTTGCTCCAgca                                                        >  2:117905/1‑141 (MQ=255)                                                                                                 ttGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGAc                                              >  1:588171/1‑143 (MQ=255)                                                                                                       aTTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATc                                        >  1:725384/1‑143 (MQ=255)                                                                                                         tGAGGGGGATGACTGGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGa                                      <  2:684412/143‑1 (MQ=255)                                                                                                              tggATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCCCa                                 <  2:631200/142‑1 (MQ=255)                                                                                                                   ttcTTGATTCCGCCATAACAACGCCCCGGCGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAACAACATCGCCATTTGGCTGTCTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAg                            <  2:76700/141‑1 (MQ=255)                                                                                                                   gACTTGATTCTGCCATAAAAAAGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataggttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttg                            <  1:73509‑M2/143‑110 (MQ=255)                                                                                                                      ttGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGCACAAATCGATCTCATTCAAgcg                         >  1:273687/1‑143 (MQ=255)                                                                                                                      ttGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGgcg                         >  1:467696/1‑143 (MQ=255)                                                                                                                        tatccTGACATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCAGTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                       <  2:382439/139‑1 (MQ=255)                                                                                                                        gATTGTGCCAGAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTGCACTGAATAATAACATCGCCATGTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                       <  2:147079/143‑1 (MQ=255)                                                                                                                        gATTCTGCCATAAAAAAGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataaattgtgaacggtgaattgacttgggttctttcattactggccgttgccatcgactcgtttgc                       <  1:321350‑M2/143‑115 (MQ=255)                                                                                                                        gATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGcgcg                       <  2:546726/143‑1 (MQ=255)                                                                                                                         aTTCCGCCATAAAAACGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCgg                      <  1:495979/143‑1 (MQ=255)                                                                                                                          ttCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCGCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCggg                     <  2:494925/143‑1 (MQ=255)                                                                                                                               ccATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATc                >  2:732328/1‑143 (MQ=255)                                                                                                                                       aaGCCCCGACGAGAcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataagttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttgtttgcgacgggcagagtgcg        <  1:36235‑M2/143‑130 (MQ=255)                                                                                                                                        aGCCCCGtctcgtcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataagttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttgtttgcgacgggcagcgtgcgt       >  2:660565‑M1/1‑7 (MQ=255)                                                                                                                                          ccccGtctcgtcggggcttttttatggcagaatcaagtcatccccctcaattaacaaggataagttgtgaacggtgaattgatttgggttctttcattactggccgttgccatcgtcttgtttgcgacgggcagagtgcgtat     >  2:766587‑M1/1‑5 (MQ=255)                                                                                                                                             cgacgaTGCGGGGCCAAATCCTTATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTaa  <  2:129350/143‑1 (MQ=255)                                                                                                                                             cgacgaGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGACTACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTaa  <  2:176063/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              GACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTTGTTAATTGAGGGGGATGACTTGATTCTGCCATAAAAAAGCCCCGACGAGACGGGGCTAAATCATGATCAGGTGTTTCACTGAATAATAACATCGCCATTTGGCTGTTTGGTCACAGTAATTTGCTCCAGACTGTGGAGGACCAAATCGACCTCATTCAGGCGCGGGGTATCTGCCGGAGCGTTAA  >  NC_000913/2411266‑2411548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.